BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0158800 Os12g0158800|AK059233
(446 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0158800 Similar to E2F homolog (Fragment) 795 0.0
Os02g0537500 Similar to E2F homolog 399 e-111
Os04g0416100 Similar to Transcription factor E2F1 (E2F-1) (... 299 3e-81
Os04g0112200 Transcription factor E2F/dimerisation partner ... 206 3e-53
>Os12g0158800 Similar to E2F homolog (Fragment)
Length = 446
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/433 (92%), Positives = 401/433 (92%)
Query: 14 RVLLQRYQPFAPPPGEYHQFGSGGAAAAGDMTEAVLIRTPLKRKHDREENEAAESNDWMM 73
RVLLQRYQPFAPPPGEYHQFGSGGAAAAGDMTEAVLIRTPLKRKHDREENEAAESNDWMM
Sbjct: 14 RVLLQRYQPFAPPPGEYHQFGSGGAAAAGDMTEAVLIRTPLKRKHDREENEAAESNDWMM 73
Query: 74 SPGYTNPAGSPVPTPLXXXXXXXXXXXXXXXXXXXCPQTPLCASSPGNPVTPVGGCRYDS 133
SPGYTNPAGSPVPTPL CPQTPLCASSPGNPVTPVGGCRYDS
Sbjct: 74 SPGYTNPAGSPVPTPLSGKGSKAFAKSKAAKGQKSCPQTPLCASSPGNPVTPVGGCRYDS 133
Query: 134 SXXXXXXXXXXXXXGAPGGIVDLNNAAETLEVQKRRIYDITNVLEGIGLIEKKLKNNIRW 193
S GAPGGIVDLNNAAETLEVQKRRIYDITNVLEGIGLIEKKLKNNIRW
Sbjct: 134 SLGLLTKKFLNLLKGAPGGIVDLNNAAETLEVQKRRIYDITNVLEGIGLIEKKLKNNIRW 193
Query: 194 KGIDDSRPGEVSDDMSILQADIEALSLQEHSVDQQISEMRDKLRGLTEDENNQKWLYVTE 253
KGIDDSRPGEVSDDMSILQADIEALSLQEHSVDQQISEMRDKLRGLTEDENNQKWLYVTE
Sbjct: 194 KGIDDSRPGEVSDDMSILQADIEALSLQEHSVDQQISEMRDKLRGLTEDENNQKWLYVTE 253
Query: 254 DDIKSLPCFQNQTLIAIKAPHGTTLEVPDPDEVNDYPQRRYRIVLRSTMGPIDVYLVSQF 313
DDIKSLPCFQNQTLIAIKAPHGTTLEVPDPDEVNDYPQRRYRIVLRSTMGPIDVYLVSQF
Sbjct: 254 DDIKSLPCFQNQTLIAIKAPHGTTLEVPDPDEVNDYPQRRYRIVLRSTMGPIDVYLVSQF 313
Query: 314 EEMSGMETPPRTVQPVSMDSLENPRTPLAAEPNKAAESQPNIQDGLLMPSDAPSSSQDIG 373
EEMSGMETPPRTVQPVSMDSLENPRTPLAAEPNKAAESQPNIQDGLLMPSDAPSSSQDIG
Sbjct: 314 EEMSGMETPPRTVQPVSMDSLENPRTPLAAEPNKAAESQPNIQDGLLMPSDAPSSSQDIG 373
Query: 374 GMMKIVPSELDTDADYWLLSDAGVSITDMWKTAPEVEWEGIEKFNAEDFLEVSTPRQQDK 433
GMMKIVPSELDTDADYWLLSDAGVSITDMWKTAPEVEWEGIEKFNAEDFLEVSTPRQQDK
Sbjct: 374 GMMKIVPSELDTDADYWLLSDAGVSITDMWKTAPEVEWEGIEKFNAEDFLEVSTPRQQDK 433
Query: 434 PSSDIMDGDSCIS 446
PSSDIMDGDSCIS
Sbjct: 434 PSSDIMDGDSCIS 446
>Os02g0537500 Similar to E2F homolog
Length = 475
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 239/446 (53%), Positives = 292/446 (65%), Gaps = 43/446 (9%)
Query: 22 PFAPPPGEYHQF----------------GSGGAAAAGDMTEAVLIRTPLKRKHDREENEA 65
PFA P +YH+F G+GGA GD+ E ++IRTP KRK EE++
Sbjct: 31 PFAAP-NDYHRFPAGGAAAAAASGSGGIGAGGAGGGGDIEEGLVIRTPQKRKAP-EESDV 88
Query: 66 AESNDWMM-SPGYTNPAGSPVPTPLXXXXXXXXXXXXXXXXXXXCPQTPLC-ASSPGNPV 123
AES+D M+ SPG+ A SP+ TP+ PQTP SP NP
Sbjct: 89 AESSDCMITSPGF---AVSPMLTPVSGKAVKTSKSKTKNNKAG--PQTPTSNVGSPLNPP 143
Query: 124 TPVGGCRYDSSXXXXXXXXXXXXXGAPGGIVDLNNAAETLEVQKRRIYDITNVLEGIGLI 183
TPVG CRYDSS AP GI+DLNNAAETLEVQKRRIYDITNVLEGIGLI
Sbjct: 144 TPVGTCRYDSSLGLLTKKFINLLKQAPDGILDLNNAAETLEVQKRRIYDITNVLEGIGLI 203
Query: 184 EKKLKNNIRWKGIDDSRPGEVSDDMSILQADIEALSLQEHSVDQQISEMRDKLRGLTEDE 243
EK LKN IRWKG+DDS E+ + +S LQA++E LSL+E ++D++IS+MR+KLRGLTEDE
Sbjct: 204 EKTLKNRIRWKGLDDSGV-ELDNGLSALQAEVENLSLKEQALDERISDMREKLRGLTEDE 262
Query: 244 NNQKWLYVTEDDIKSLPCFQNQTLIAIKAPHGTTLEVPDPDEVNDYPQRRYRIVLRSTMG 303
NNQ+WLYVTEDDIK LPCFQN+TLIAIKAPHGTTLEVPDPDE DY QRRYRIVLRSTMG
Sbjct: 263 NNQRWLYVTEDDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAGDYLQRRYRIVLRSTMG 322
Query: 304 PIDVYLVSQ----FEEMSGMETPPRTV-----QPVSMDSLENPRTPLAAEPNKAAESQPN 354
PIDVYLVSQ FE++ G TP QP + + N + + + N
Sbjct: 323 PIDVYLVSQFDEKFEDLGGGATPSGHANVPKHQPTEVFNTTNAG---VGQCSNSVAVDNN 379
Query: 355 IQDGLLMPSDAPSSSQDIGGMMKIVPSELDTDADYWLLSDAGVSITDMWKTAPEVEWEGI 414
IQ +P D PS+S D GGM +I+PS++DTDADYWL+S+ VSITDMWKTAP+V+W+
Sbjct: 380 IQHSQTIPQD-PSASHDFGGMTRIIPSDIDTDADYWLISEGDVSITDMWKTAPDVQWD-- 436
Query: 415 EKFNAEDFL--EVSTPRQQDKPSSDI 438
E + + FL +V TP ++ S +
Sbjct: 437 ESLDTDVFLSEDVRTPSSHNQQPSAV 462
>Os04g0416100 Similar to Transcription factor E2F1 (E2F-1) (Fragment)
Length = 319
Score = 299 bits (766), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 159/291 (54%), Positives = 200/291 (68%), Gaps = 9/291 (3%)
Query: 23 FAPPPGEYHQFGSGGAAAAGDMTEAVLIR-TPLKRKHDREENEAAESNDWMM-SPGYTNP 80
FA PG+YH+F + A+ G++ E ++IR TPLKRK E+EAAES++ MM SPG+T
Sbjct: 34 FAAAPGDYHRFAA--ASRGGEIEEGIVIRRTPLKRKTPCGESEAAESSERMMTSPGFTEG 91
Query: 81 AGSPVPTPLXXXXXXXXXXXXXXXXXXXCPQTPLC-ASSPGNPVTPVGGCRYDSSXXXXX 139
GSP+ TP+ PQTP+ A SPGNP TP RYD+S
Sbjct: 92 VGSPLMTPVSGKTSRTTKSMAKFNKAG--PQTPISNAGSPGNPSTPAS-SRYDNSLGLLT 148
Query: 140 XXXXXXXXGAPGGIVDLNNAAETLEVQKRRIYDITNVLEGIGLIEKKLKNNIRWKGIDDS 199
GI+DLN+AA+ L+V+KRRIYDITNVLEG GLIEKKLKN IRW+G DDS
Sbjct: 149 RKFINLLKQTQDGILDLNDAAKILDVRKRRIYDITNVLEGTGLIEKKLKNRIRWRGSDDS 208
Query: 200 RPGEVSDDMSILQADIEALSLQEHSVDQQISEMRDKLRGLTEDENNQKWLYVTEDDIKSL 259
+ D+S L+ ++E L +QE ++D+ ISE+R+K+ LTEDE+N +WL+VTEDDIK L
Sbjct: 209 -GTNLDSDISCLKTEVENLYIQEQALDRSISEIREKMEELTEDESNHRWLFVTEDDIKGL 267
Query: 260 PCFQNQTLIAIKAPHGTTLEVPDPDEVNDYPQRRYRIVLRSTMGPIDVYLV 310
PCFQN+ LIAIK P GTT+EVPDPDE DY QRRYRI+LRSTMGPID+YLV
Sbjct: 268 PCFQNEALIAIKGPRGTTVEVPDPDEAGDYLQRRYRILLRSTMGPIDIYLV 318
>Os04g0112200 Transcription factor E2F/dimerisation partner (TDP) family protein
Length = 494
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 174/309 (56%), Gaps = 38/309 (12%)
Query: 129 CRYDSSXXXXXXXXXXXXXGAPGGIVDLNNAAETLEVQKRRIYDITNVLEGIGLIEKKLK 188
CRYDSS GA G +DLN AAETLEVQKRRIYDITNVLEG+ LIEK LK
Sbjct: 192 CRYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETLEVQKRRIYDITNVLEGVDLIEKTLK 251
Query: 189 NNIRWKGIDDSRPGEVSDDMSILQ-----------------------ADIEALSLQEHSV 225
N IRWKG D S+P E +S L+ +IE+L +E +
Sbjct: 252 NMIRWKGFDMSKPKERERQISALKLLELNSITMTVTVPFYVPSKETMEEIESLYDEESRL 311
Query: 226 DQQISEMRDKLRGLTEDENNQKWLYVTEDDIKSLPCFQNQTLIAIKAPHGTTLEVPDPD- 284
D +I E ++KL L DE+ +K LYV+++DI ++P FQ TLIA+ AP GT +EVPDP+
Sbjct: 312 DDEIMEAQEKLNALRVDEDRRKLLYVSKEDINAIPRFQGSTLIAVNAPRGTYIEVPDPNL 371
Query: 285 -----EVNDYPQRRYRIVLRSTMGPIDVYLVSQFEEM--SGMETPPRTVQPVSMDSLENP 337
+ D ++ Y+IV RS MGP+D +L+S +E + + V+ S + P
Sbjct: 372 DMDIYKDLDNQEKHYQIVFRSAMGPVDCFLISNHQETFNADQQMADNLDAAVTSGSSQAP 431
Query: 338 RTPLAAEPNKAAESQPNIQDGLLMPSDAPSSSQD-IGGMMKIVPSELDTDADYWLLSDAG 396
+ + ++ ES +G+ + PS D + G++KIVPS+ D ADYWL SDA
Sbjct: 432 QQMDYVQASEIGES-----NGVREHTSEPSKRDDPVPGIVKIVPSD-DIAADYWLSSDAD 485
Query: 397 VSITDMWKT 405
VS+TD W T
Sbjct: 486 VSMTDTWGT 494
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,417,962
Number of extensions: 714445
Number of successful extensions: 1613
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1599
Number of HSP's successfully gapped: 4
Length of query: 446
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 342
Effective length of database: 11,605,545
Effective search space: 3969096390
Effective search space used: 3969096390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)