Os12g0158800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to E2F homolog (Fragment).
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Os12g0158800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to E2F homolog (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.46 | 0.405 | 9.52 | -0.0216 | 2.57 | -0.532 | -1.06 | -0.2 | 0.13 | 3.5 | 25.25 | 237 | -- | -- |
| 74.56 | 0.402 | 9.52 | 0.0329 | 2.58 | -0.533 | -0.975 | -- | 0.145 | 3.49 | 25.25 | 236 | -- | -- |
| 77.26 | 0.409 | 9.51 | 0.121 | 2.59 | -0.526 | -- | 0.273 | 0.168 | 3.53 | 25.25 | 235 | -- | -- |
| 77.47 | 0.41 | 9.52 | 0.0438 | 2.59 | -0.509 | -- | -- | 0.139 | 3.53 | 25.22 | 234 | -- | -- |
| 317.96 | 0.83 | 9.58 | 0.437 | -- | -1.54 | -- | -0.571 | 0.304 | -- | 26.3 | 189 | -- | -- |
| 88.51 | 0.441 | 9.56 | -0.117 | 2.96 | -- | -0.724 | -- | -0.088 | 3.68 | -- | -- | -- | -- |
| 90.08 | 0.444 | 9.56 | -0.105 | 2.96 | -- | -- | -- | -0.0838 | 3.7 | -- | -- | -- | -- |
| 300.97 | 0.808 | 9.44 | 0.48 | -- | -1.79 | -- | -- | 0.542 | -- | 25.86 | 155 | -- | -- |
| 77.52 | 0.41 | 9.52 | -- | 2.6 | -0.503 | -- | -- | 0.132 | 3.54 | 25.22 | 234 | -- | -- |
| 573.79 | 1.12 | 9.57 | 0.0179 | -- | -- | -- | -- | -0.00513 | -- | -- | -- | -- | -- |
| 90.38 | 0.445 | 9.56 | -- | 2.95 | -- | -- | -- | -0.0721 | 3.7 | -- | -- | -- | -- |
| 306.92 | 0.816 | 9.45 | -- | -- | -1.76 | -- | -- | 0.484 | -- | 25.9 | 155 | -- | -- |
| 573.79 | 1.12 | 9.57 | -- | -- | -- | -- | -- | -0.00712 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 2 | 61.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 3 | 61.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 6 | 61.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 11 | 62.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 19 | 62.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 30 | 63.63 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 18 |
| 44 | 64.12 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 83 | 65.31 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 88 | 65.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 95 | 65.45 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 116 | 65.76 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 16 |
| 126 | 65.91 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 152 | 66.24 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 202 | 66.88 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 267 | 67.77 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 277 | 67.84 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 387 | 68.79 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 419 | 69.03 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 474 | 69.41 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 19 |
| 476 | 69.43 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 1 | 18 |
| 478 | 69.46 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 11 |
| 537 | 69.78 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 11 |
| 585 | 70.12 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 586 | 70.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 709 | 70.67 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 6 | 3 |
| 757 | 70.95 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 21 |
| 772 | 71.02 | radiation | 1 | 270 | > th | dose independent | rect. | 18 | 22 |
| 796 | 71.13 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 818 | 71.23 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 18 |
| 836 | 71.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 839 | 71.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 851 | 71.36 | radiation | 1 | 270 | > th | dose independent | rect. | 5 | 11 |
| 896 | 71.52 | temperature | 15 | 270 | > th | dose independent | rect. | 5 | 11 |
| 906 | 71.56 | wind | 7 | 270 | < th | dose independent | rect. | 4 | 23 |
| 924 | 71.64 | radiation | 40 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 957 | 71.75 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 3 | 20 |
| 966 | 71.78 | wind | 7 | 270 | < th | dose independent | rect. | 6 | 19 |