Os04g0416100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor E2F1 (E2F-1) (Fragment).
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Os04g0416100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor E2F1 (E2F-1) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.44 | 0.383 | 8.1 | -0.579 | 0.378 | 6.5 | -0.231 | -18.1 | 0.0088 | 11.5 | 0.9809 | 91 | -- | -- |
| 66.94 | 0.381 | 8.09 | -0.45 | 0.356 | 2.15 | -0.154 | -- | -0.0021 | 10.8 | 1.278 | 154 | -- | -- |
| 66.64 | 0.38 | 8.11 | -0.612 | 0.378 | 7.13 | -- | -21.1 | 0.00566 | 11.4 | 0.8994 | 79 | -- | -- |
| 66.67 | 0.38 | 8.08 | -0.49 | 0.382 | 2.47 | -- | -- | 0.00913 | 11.3 | 1.344 | 154 | -- | -- |
| 75.66 | 0.405 | 8.13 | -0.667 | -- | 9.62 | -- | -30.3 | 0.00355 | -- | 0.6778 | 83 | -- | -- |
| 74.6 | 0.405 | 8.08 | -0.45 | 0.369 | -- | -0.277 | -- | 0.00153 | 11.8 | -- | -- | -- | -- |
| 74.93 | 0.405 | 8.08 | -0.462 | 0.37 | -- | -- | -- | 0.000221 | 11.8 | -- | -- | -- | -- |
| 75.84 | 0.406 | 8.09 | -0.513 | -- | 2.33 | -- | -- | 0.00414 | -- | 1.349 | 155 | -- | -- |
| 73.31 | 0.399 | 8.07 | -- | 0.387 | 2.34 | -- | -- | 0.0639 | 11.4 | 1.39 | 154 | -- | -- |
| 83.53 | 0.427 | 8.09 | -0.472 | -- | -- | -- | -- | -0.00444 | -- | -- | -- | -- | -- |
| 80.55 | 0.42 | 8.07 | -- | 0.375 | -- | -- | -- | 0.0516 | 11.9 | -- | -- | -- | -- |
| 82.68 | 0.423 | 8.08 | -- | -- | 2.26 | -- | -- | 0.0592 | -- | 1.42 | 152 | -- | -- |
| 89.42 | 0.441 | 8.08 | -- | -- | -- | -- | -- | 0.048 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.25 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 16 | 3 |
| 3 | 64.28 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 14 | 5 |
| 7 | 64.90 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 6 | 13 |
| 8 | 64.91 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 10 | 9 |
| 18 | 65.33 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 6 | 13 |
| 21 | 65.37 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 9 |
| 41 | 65.84 | precipitation | 0.1 | 90 | > th | dose independent | sin | 21 | NA |
| 43 | 65.86 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 22 | NA |
| 55 | 66.14 | precipitation | 0.1 | 90 | < th | dose independent | sin | 22 | NA |
| 60 | 66.14 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 22 | NA |
| 100 | 66.36 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 16 | 8 |
| 119 | 66.42 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 17 |
| 131 | 66.44 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 6 | 20 |
| 150 | 66.46 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 164 | 66.48 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 11 |
| 168 | 66.48 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 16 | 10 |
| 207 | 66.51 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 6 | 18 |
| 276 | 66.69 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 3 |
| 296 | 66.69 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 3 |
| 403 | 66.78 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 21 | 22 |
| 404 | 66.79 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 1 |
| 448 | 66.97 | precipitation | 0.1 | 10 | > th | dose independent | sin | 20 | NA |
| 454 | 66.97 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 20 | NA |
| 510 | 67.27 | humidity | 90.0 | 270 | > th | dose independent | rect. | 17 | 1 |
| 521 | 67.40 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 16 | 22 |
| 531 | 67.44 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 533 | 67.45 | precipitation | 0.1 | 90 | > th | dose dependent | no | NA | NA |
| 544 | 67.45 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 22 |
| 555 | 67.46 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 16 | 19 |
| 562 | 67.47 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 1 |
| 563 | 67.47 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 646 | 67.71 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 17 | 1 |
| 654 | 67.75 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 22 | 21 |
| 660 | 67.79 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 19 | 23 |
| 666 | 67.87 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 670 | 67.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 673 | 67.89 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 675 | 67.90 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 680 | 67.92 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 690 | 67.95 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 693 | 67.96 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 698 | 67.96 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 714 | 68.00 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 716 | 68.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 718 | 68.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 720 | 68.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 727 | 68.02 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 763 | 68.03 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 775 | 68.03 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 786 | 68.04 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 805 | 68.07 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 806 | 68.07 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 812 | 68.07 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 818 | 68.08 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 1 |
| 848 | 68.08 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 877 | 68.09 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 878 | 68.09 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 880 | 68.09 | wind | 9.0 | 4320 | < th | dose independent | rect. | 12 | 15 |
| 882 | 68.09 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 893 | 68.11 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 961 | 68.19 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 980 | 68.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |