Os02g0537500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to E2F homolog.
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Os02g0537500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to E2F homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.15 | 0.271 | 9.01 | -0.0152 | 0.235 | -0.671 | -0.495 | 0.934 | 0.0374 | 22.4 | 1.08 | 10 | -- | -- |
| 33.58 | 0.27 | 9.01 | -0.028 | 0.268 | -0.671 | -0.96 | -- | 0.0494 | 22.6 | 4.297 | 59 | -- | -- |
| 33.58 | 0.27 | 9.01 | -0.00901 | 0.227 | -0.682 | -- | 1.4 | 0.0379 | 22.1 | -4.596 | 10 | -- | -- |
| 37.17 | 0.284 | 9 | 0.0343 | 0.214 | -0.798 | -- | -- | 0.0631 | 20.9 | 1.741 | 59 | -- | -- |
| 35.25 | 0.277 | 9 | 0.00322 | -- | -0.888 | -- | 1.37 | 0.0385 | -- | -2.062 | 10 | -- | -- |
| 40.77 | 0.299 | 9.02 | -0.0101 | 0.581 | -- | -0.982 | -- | 0.0364 | 23.4 | -- | -- | -- | -- |
| 44.92 | 0.314 | 9.01 | 0.0301 | 0.586 | -- | -- | -- | 0.0405 | 23.4 | -- | -- | -- | -- |
| 38.88 | 0.29 | 9 | 0.0252 | -- | -0.937 | -- | -- | 0.0673 | -- | -4.324 | 56 | -- | -- |
| 36.58 | 0.282 | 9.01 | -- | 0.298 | -0.769 | -- | -- | 0.072 | 19.9 | -2.535 | 159 | -- | -- |
| 66.41 | 0.381 | 9 | 0.0452 | -- | -- | -- | -- | 0.0464 | -- | -- | -- | -- | -- |
| 44.95 | 0.314 | 9.02 | -- | 0.586 | -- | -- | -- | 0.0372 | 23.4 | -- | -- | -- | -- |
| 38.89 | 0.29 | 9 | -- | -- | -0.937 | -- | -- | 0.0645 | -- | -10.96 | 56 | -- | -- |
| 66.47 | 0.381 | 9 | -- | -- | -- | -- | -- | 0.0414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.41 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 6 | 32.46 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 10 |
| 7 | 32.53 | radiation | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 8 | 32.62 | radiation | 10 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 17 | 32.86 | radiation | 1 | 10 | > th | dose dependent | rect. | 8 | 11 |
| 30 | 32.88 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 31 | 32.89 | radiation | 20 | 270 | < th | dose dependent | sin | 1 | NA |
| 46 | 32.96 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 58 | 32.97 | radiation | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 59 | 32.98 | radiation | 20 | 270 | < th | dose independent | rect. | 9 | 23 |
| 65 | 33.03 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 79 | 33.12 | radiation | 1 | 10 | > th | dose dependent | sin | 22 | NA |
| 81 | 33.12 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 83 | 33.13 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 107 | 33.14 | radiation | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 108 | 33.15 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 242 | 33.26 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 292 | 33.28 | radiation | 1 | 90 | > th | dose dependent | sin | 23 | NA |
| 305 | 33.29 | radiation | 40 | 10 | > th | dose independent | rect. | 13 | 23 |
| 311 | 33.32 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 12 |
| 312 | 33.32 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 14 |
| 329 | 33.34 | radiation | 20 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 337 | 33.36 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 358 | 33.39 | radiation | 1 | 270 | > th | dose dependent | sin | 3 | NA |
| 377 | 33.43 | radiation | 40 | 10 | < th | dose dependent | sin | 23 | NA |
| 391 | 33.44 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 509 | 33.47 | radiation | 10 | 90 | > th | dose independent | sin | 23 | NA |
| 512 | 33.47 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 519 | 33.50 | radiation | 10 | 270 | < th | dose independent | sin | 1 | NA |
| 555 | 33.52 | radiation | 40 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 596 | 33.56 | radiation | 30 | 10 | < th | dose independent | rect. | 5 | 10 |
| 602 | 33.57 | radiation | 30 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 609 | 33.59 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 622 | 33.63 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 625 | 33.63 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 643 | 33.67 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 660 | 33.70 | radiation | 10 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 960 | 33.80 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 10 |