BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0149800 Os12g0149800|AK103299
(145 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0149800 Similar to G10 304 1e-83
Os05g0446300 Similar to G10 protein homolog (EDG-2) 276 3e-75
Os04g0646100 Similar to Cell cycle control protein cwf14 273 3e-74
Os01g0857700 Similar to G10 273 3e-74
AK061754 273 3e-74
D10437 143 5e-35
>Os12g0149800 Similar to G10
Length = 145
Score = 304 bits (779), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MPKIKTSGVKYPDGWELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSRYL 60
MPKIKTSGVKYPDGWELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSRYL
Sbjct: 1 MPKIKTSGVKYPDGWELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSRYL 60
Query: 61 YDLYYNRKEISQELYEFCLDQGHADRNLIAKWKKQGYERLCCLRCIQTRDHNFATTCVCR 120
YDLYYNRKEISQELYEFCLDQGHADRNLIAKWKKQGYERLCCLRCIQTRDHNFATTCVCR
Sbjct: 61 YDLYYNRKEISQELYEFCLDQGHADRNLIAKWKKQGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEQVIECVHCGCKGCASGD 145
VPKHLREEQVIECVHCGCKGCASGD
Sbjct: 121 VPKHLREEQVIECVHCGCKGCASGD 145
>Os05g0446300 Similar to G10 protein homolog (EDG-2)
Length = 145
Score = 276 bits (706), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 128/145 (88%), Positives = 140/145 (96%)
Query: 1 MPKIKTSGVKYPDGWELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSRYL 60
MPKIKTS VKYP+GWELIEPTL +L +KMREAENDPHDG+RKCEALWPIF+I+HQ+SRY+
Sbjct: 1 MPKIKTSRVKYPEGWELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYI 60
Query: 61 YDLYYNRKEISQELYEFCLDQGHADRNLIAKWKKQGYERLCCLRCIQTRDHNFATTCVCR 120
YDLYY RKEIS+ELYEFCLDQGHAD+NLIAKWKK GYERLCCLRCIQTRDHNFATTCVCR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEQVIECVHCGCKGCASGD 145
VPKHLREE+VIECVHCGC+GCASGD
Sbjct: 121 VPKHLREEKVIECVHCGCRGCASGD 145
>Os04g0646100 Similar to Cell cycle control protein cwf14
Length = 145
Score = 273 bits (699), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/145 (88%), Positives = 138/145 (95%)
Query: 1 MPKIKTSGVKYPDGWELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSRYL 60
MPKIKTS VKYP GWELIEPT+ EL +KMREAEND HDG+RKCEALWPIF+I+HQRSRY+
Sbjct: 1 MPKIKTSRVKYPGGWELIEPTIRELDAKMREAENDTHDGKRKCEALWPIFRISHQRSRYI 60
Query: 61 YDLYYNRKEISQELYEFCLDQGHADRNLIAKWKKQGYERLCCLRCIQTRDHNFATTCVCR 120
YDLYY RKEIS+ELYEFCLDQG+ADRNLIAKWKK GYERLCCLRCIQTRDHNFATTCVCR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEQVIECVHCGCKGCASGD 145
VPKHLREE+VIECVHCGC+GCASGD
Sbjct: 121 VPKHLREEKVIECVHCGCRGCASGD 145
>Os01g0857700 Similar to G10
Length = 145
Score = 273 bits (699), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/145 (88%), Positives = 138/145 (95%)
Query: 1 MPKIKTSGVKYPDGWELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSRYL 60
MPKIKTS VKYP GWELIEPT+ EL +KMREAEND HDG+RKCEALWPIF+I+HQRSRY+
Sbjct: 1 MPKIKTSRVKYPGGWELIEPTIRELDAKMREAENDTHDGKRKCEALWPIFRISHQRSRYI 60
Query: 61 YDLYYNRKEISQELYEFCLDQGHADRNLIAKWKKQGYERLCCLRCIQTRDHNFATTCVCR 120
YDLYY RKEIS+ELYEFCLDQG+ADRNLIAKWKK GYERLCCLRCIQTRDHNFATTCVCR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEQVIECVHCGCKGCASGD 145
VPKHLREE+VIECVHCGC+GCASGD
Sbjct: 121 VPKHLREEKVIECVHCGCRGCASGD 145
>AK061754
Length = 145
Score = 273 bits (699), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/145 (88%), Positives = 138/145 (95%)
Query: 1 MPKIKTSGVKYPDGWELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSRYL 60
MPKIKTS VKYP GWELIEPT+ EL +KMREAEND HDG+RKCEALWPIF+I+HQRSRY+
Sbjct: 1 MPKIKTSRVKYPGGWELIEPTIRELDAKMREAENDTHDGKRKCEALWPIFRISHQRSRYI 60
Query: 61 YDLYYNRKEISQELYEFCLDQGHADRNLIAKWKKQGYERLCCLRCIQTRDHNFATTCVCR 120
YDLYY RKEIS+ELYEFCLDQG+ADRNLIAKWKK GYERLCCLRCIQTRDHNFATTCVCR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEQVIECVHCGCKGCASGD 145
VPKHLREE+VIECVHCGC+GCASGD
Sbjct: 121 VPKHLREEKVIECVHCGCRGCASGD 145
>D10437
Length = 115
Score = 143 bits (360), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 73/82 (89%)
Query: 15 WELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSRYLYDLYYNRKEISQEL 74
WELIEPTLSELHSKMREAENDPHDGRRKCEA P + + +RYLYDLYYNRKEISQEL
Sbjct: 12 WELIEPTLSELHSKMREAENDPHDGRRKCEACGPSSRSITRGARYLYDLYYNRKEISQEL 71
Query: 75 YEFCLDQGHADRNLIAKWKKQG 96
YEFCLDQGHADRNLIAKWKKQ
Sbjct: 72 YEFCLDQGHADRNLIAKWKKQA 93
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,637,300
Number of extensions: 222888
Number of successful extensions: 450
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 6
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)