Os12g0149800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to G10.
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Os12g0149800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to G10.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.34 | 0.283 | 12.4 | -0.318 | 0.176 | -0.558 | 0.393 | 0.6 | 0.0403 | 0.482 | 22.6 | 1741 | -- | -- |
| 37.18 | 0.284 | 12.4 | -0.163 | 0.183 | -0.611 | 0.406 | -- | 0.0937 | 0.578 | 22 | 1750 | -- | -- |
| 36.96 | 0.283 | 12.4 | -0.326 | 0.176 | -0.562 | -- | 0.578 | 0.042 | 24 | 22.47 | 1740 | -- | -- |
| 37.84 | 0.287 | 12.4 | -0.15 | 0.177 | -0.585 | -- | -- | 0.099 | 0.0354 | 22.15 | 1751 | -- | -- |
| 38.68 | 0.29 | 12.4 | -0.35 | -- | -0.569 | -- | 0.626 | 0.0292 | -- | 22.54 | 1999 | -- | -- |
| 49.6 | 0.33 | 12.4 | 0.101 | 0.185 | -- | 0.362 | -- | 0.294 | 0.392 | -- | -- | -- | -- |
| 50.14 | 0.332 | 12.4 | 0.0881 | 0.185 | -- | -- | -- | 0.293 | 23.9 | -- | -- | -- | -- |
| 39.52 | 0.293 | 12.4 | -0.129 | -- | -0.571 | -- | -- | 0.0874 | -- | 22.44 | 1992 | -- | -- |
| 38.11 | 0.288 | 12.4 | -- | 0.18 | -0.531 | -- | -- | 0.117 | 23.8 | 22.49 | 1646 | -- | -- |
| 52.29 | 0.338 | 12.4 | 0.0937 | -- | -- | -- | -- | 0.295 | -- | -- | -- | -- | -- |
| 50.34 | 0.332 | 12.4 | -- | 0.186 | -- | -- | -- | 0.283 | 23.9 | -- | -- | -- | -- |
| 39.92 | 0.294 | 12.4 | -- | -- | -0.542 | -- | -- | 0.111 | -- | 22.49 | 1988 | -- | -- |
| 52.53 | 0.338 | 12.4 | -- | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.39 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 3 | 36.49 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 12 | 36.50 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 18 | 36.51 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 39 | 36.64 | humidity | 60 | 43200 | < th | dose dependent | sin | 4 | NA |
| 62 | 36.72 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 112 | 37.01 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 113 | 37.01 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 19 |
| 129 | 37.02 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 17 |
| 148 | 37.02 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 22 |
| 202 | 37.04 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 243 | 37.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 246 | 37.16 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 256 | 37.19 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 276 | 37.25 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 291 | 37.28 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 322 | 37.33 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 323 | 37.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 324 | 37.34 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 352 | 37.40 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 354 | 37.41 | radiation | 30 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 370 | 37.44 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 398 | 37.49 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 401 | 37.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 404 | 37.50 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 410 | 37.51 | humidity | 60 | 43200 | < th | dose independent | sin | 8 | NA |
| 427 | 37.54 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 458 | 37.59 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 464 | 37.60 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 481 | 37.62 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 495 | 37.64 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 570 | 37.69 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 574 | 37.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 580 | 37.70 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 583 | 37.70 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 619 | 37.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 623 | 37.72 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 626 | 37.72 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 661 | 37.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 700 | 37.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 12 |
| 704 | 37.77 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 720 | 37.78 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 726 | 37.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 735 | 37.79 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 746 | 37.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 834 | 37.84 | radiation | 30 | 43200 | < th | dose independent | sin | 7 | NA |
| 872 | 37.85 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 904 | 37.86 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 929 | 37.87 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 933 | 37.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |