BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0140300 Os12g0140300|AK102092
(639 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0140300 Conserved hypothetical protein 1146 0.0
Os11g0144600 231 1e-60
Os01g0596000 Cyclin-like F-box domain containing protein 90 5e-18
Os11g0138225 84 2e-16
Os11g0138200 84 2e-16
Os01g0596100 Cyclin-like F-box domain containing protein 70 7e-12
Os01g0595900 Cyclin-like F-box domain containing protein 69 1e-11
>Os12g0140300 Conserved hypothetical protein
Length = 639
Score = 1146 bits (2965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/639 (88%), Positives = 568/639 (88%)
Query: 1 MADDVSKRCSPEEEVIADILFAXXXXXXXXXXXXXXEINRTGGDSTRDGDSAEKSRTGRG 60
MADDVSKRCSPEEEVIADILFA EINRTGGDSTRDGDSAEKSRTGRG
Sbjct: 1 MADDVSKRCSPEEEVIADILFALPRGPRPVLLRRRGEINRTGGDSTRDGDSAEKSRTGRG 60
Query: 61 HXXXXXXXXXXXXXXXXXYSREDLATKXXXXXXXXXXXEAFQSKREGALRYRCTIEDLST 120
H YSREDLATK EAFQSKREGALRYRCTIEDLST
Sbjct: 61 HEIRGRAGGVEAEAARGGYSREDLATKGGSVGSRDGGGEAFQSKREGALRYRCTIEDLST 120
Query: 121 SKXXXXXXXXXXXXXXXXXVAAAERDTRCRYSVQDLSTVGKSGGMYDGGNGPGFKEGAQE 180
SK VAAAERDTRCRYSVQDLSTVGKSGGMYDGGNGPGFKEGAQE
Sbjct: 121 SKGPGGGGGYDYELVGRGGVAAAERDTRCRYSVQDLSTVGKSGGMYDGGNGPGFKEGAQE 180
Query: 181 TVDCVQGFKTHPELGLPANDSGTDTETVDVSVSEELIRLQTTISKPKTNXXXXXXXXXXX 240
TVDCVQGFKTHPELGLPANDSGTDTETVDVSVSEELIRLQTTISKPKTN
Sbjct: 181 TVDCVQGFKTHPELGLPANDSGTDTETVDVSVSEELIRLQTTISKPKTNTATDDSADDSA 240
Query: 241 XEIEAFDVSEELIRFQTVVSKPWDAIWREAPLVFCDSFLCPTGDRSGLSQSELKDAVASI 300
EIEAFDVSEELIRFQTVVSKPWDAIWREAPLVFCDSFLCPTGDRSGLSQSELKDAVASI
Sbjct: 241 AEIEAFDVSEELIRFQTVVSKPWDAIWREAPLVFCDSFLCPTGDRSGLSQSELKDAVASI 300
Query: 301 LLNHKGVVSYFRIDSSRSLNLQTLETWFNILSEKKVKEMVLFNCSGPQKLIEFPMDILDG 360
LLNHKGVVSYFRIDSSRSLNLQTLETWFNILSEKKVKEMVLFNCSGPQKLIEFPMDILDG
Sbjct: 301 LLNHKGVVSYFRIDSSRSLNLQTLETWFNILSEKKVKEMVLFNCSGPQKLIEFPMDILDG 360
Query: 361 SQVEVLRICFFKIPEVYAFDLSKLHLLDFSYCKFDTEHLLHFVEACPNIRELHLGYYDGN 420
SQVEVLRICFFKIPEVYAFDLSKLHLLDFSYCKFDTEHLLHFVEACPNIRELHLGYYDGN
Sbjct: 361 SQVEVLRICFFKIPEVYAFDLSKLHLLDFSYCKFDTEHLLHFVEACPNIRELHLGYYDGN 420
Query: 421 VRIRSDKLEIFQVWCSTMKSVNIEHAPELRKLTIAAFPGKYSSSLSVRVINSLYLEHITC 480
VRIRSDKLEIFQVWCSTMKSVNIEHAPELRKLTIAAFPGKYSSSLSVRVINSLYLEHITC
Sbjct: 421 VRIRSDKLEIFQVWCSTMKSVNIEHAPELRKLTIAAFPGKYSSSLSVRVINSLYLEHITC 480
Query: 481 NISNQWITINGSNIQTDDKVLLNVRKLYIGLSMSKRRQREQLSNILNCLTHLEDLTIWRM 540
NISNQWITINGSNIQTDDKVLLNVRKLYIGLSMSKRRQREQLSNILNCLTHLEDLTIWRM
Sbjct: 481 NISNQWITINGSNIQTDDKVLLNVRKLYIGLSMSKRRQREQLSNILNCLTHLEDLTIWRM 540
Query: 541 DTVANNEDYDAALEDWSPKLRVKTCLKSLQICKMEGYQGGKLESDFASAVLVRANRLKRL 600
DTVANNEDYDAALEDWSPKLRVKTCLKSLQICKMEGYQGGKLESDFASAVLVRANRLKRL
Sbjct: 541 DTVANNEDYDAALEDWSPKLRVKTCLKSLQICKMEGYQGGKLESDFASAVLVRANRLKRL 600
Query: 601 IIESDKEDVFKKAVGILQKVKWTSPDVSVERRLNPLVSN 639
IIESDKEDVFKKAVGILQKVKWTSPDVSVERRLNPLVSN
Sbjct: 601 IIESDKEDVFKKAVGILQKVKWTSPDVSVERRLNPLVSN 639
>Os11g0144600
Length = 882
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/401 (34%), Positives = 223/401 (55%), Gaps = 16/401 (3%)
Query: 245 AFDVSEELIRFQTVVSKPWDAIWREAPLVFCD-SFLCPTGDRSGLSQS--ELKDAVASIL 301
AF+V +EL +VVS PW+ +W PL+F D + D+ G+ +L + SIL
Sbjct: 308 AFEVGKELTLHGSVVSSPWNELWLGKPLIFHDLDLVRAMKDQGGMPNERIDLSGKITSIL 367
Query: 302 LNHKGVVSYFRIDSSRSLN--LQTLETWFNILSEKKVKEMVLFNCSGPQKLIEFPMDILD 359
L+H G VSYFRIDSS N Q +E W ++L +K V+ +V+ NC P IEFP+ L+
Sbjct: 368 LSHPGPVSYFRIDSSVINNGAQQKIEEWCDVLRKKNVETVVMANCQWPSHPIEFPLQSLN 427
Query: 360 GSQVEVLRICFFKIPEVYAFDLSKLHLLDFSYCKFDTEHLLHFVEACPNIRELHLGYY-D 418
S + L +CFF IP++Y +S L ++D + C+ E+L V C ++REL +G + +
Sbjct: 428 CSSLRTLHLCFFNIPDMYLDHVSSLAVIDLACCRISDENLFALVCQCVSLRELDIGMFSE 487
Query: 419 GNVRIRSDKLEIFQVWCSTMKSVNIEHAPELRKLTIAAFPG------KYSSSLSVRVINS 472
G RIRS+ L+ Q+W S++ + I+ AP+L K+ I A G + SSS + ++ +
Sbjct: 488 GKERIRSESLKFLQIWRSSVSHITIQWAPKLEKVIIGAAQGMKSFSSRTSSSTWISILGA 547
Query: 473 LYLEHITCNISNQWITINGSNIQTDDKVLLNVRKLYIGLSMSKRRQREQLSNILNCLTHL 532
L + N+S+Q +I+ + + ++RKL + ++ +R+ R L N T L
Sbjct: 548 PMLREVWFNLSSQTRSIDNVYLDVGHVPITSLRKLELSIAFKERKGRHALLNFFRSCTEL 607
Query: 533 EDLTIWRMDTVANNEDYDAALEDWSPKLRVKTCLKS-LQICKMEGYQGGKLESDFASAVL 591
++L +WR D V E+ D +DWS L+ CLKS LQ+ K+ Y GG+ E ASAVL
Sbjct: 608 KELVLWREDKVYFEEECDVHSDDWSSALKDIACLKSHLQVLKLFDYGGGETEIAIASAVL 667
Query: 592 VRANRLKRLII---ESDKEDVFKKAVGILQKVKWTSPDVSV 629
++ L I S+ +D+ +A L+KV+ SP+ +
Sbjct: 668 EHGASIENLTIMSTTSNADDILSQAKQKLEKVERLSPNARI 708
>Os01g0596000 Cyclin-like F-box domain containing protein
Length = 503
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 94/380 (24%), Positives = 165/380 (43%), Gaps = 35/380 (9%)
Query: 257 TVVSKPWDAIWREAPLVFCDSFLCPTGDR----SGLSQSELKDAVAS----ILLNHKGVV 308
T +S W IWR PLV D L P G +G S ++DAVA+ +L +H G +
Sbjct: 67 TALSSRWRGIWRSTPLVLIDGDLFPQGPHISAAAGASLRSIRDAVANAVTRVLASHPGPL 126
Query: 309 SYFR-IDSSRSLNLQTLETWFNILSEKKVKEMVLFNCSGPQKLIEFPMDILDGSQVEVLR 367
+ I+ ++ L W +L+ K V+++VL N P + P IL + + L
Sbjct: 127 RFVGVINFFLGRHVDALADWLRLLAAKGVEDLVLVNRPWPLD-VRIPDTILRCASLRRLY 185
Query: 368 ICFFKIPEVYAFDLSK---LHLLDFSYCK--FDTEHLLHFVEACPNIRELHL--GY-YDG 419
+ F+ P+ HL + C D L H + CP + +L L GY
Sbjct: 186 LGVFRFPDTTGHPRGPDVFPHLQELGICHTIMDDGDLDHVLACCPALEKLALVAGYGTPS 245
Query: 420 NVRIRS-DKLEIFQVWCSTMKSVNIEHAPELRKLTI-AAFPGK---------YSSSLSVR 468
VR+ S L +W S + + I AP L +L + +P + Y+ L+
Sbjct: 246 RVRVESRHSLRCVLLWWSMIDELAIVDAPCLERLILWGTYPCEEEPIKIEIGYAPQLT-- 303
Query: 469 VINSLYLEHITCNISNQWITINGSNIQTDDKVLLNVRKLYIGLSMSKRRQREQLSNILNC 528
V+ L + +I I +++ KV +V+ L I ++ R++ E L + L C
Sbjct: 304 VLGYLDMGIHALHIGGMIIKAGVTDVSPMAKV-PSVKILGINVNFEARKEMEILPSFLRC 362
Query: 529 LTHLEDLTIWRMDTVANNEDYDAALEDWSPKLRVKTCLKSLQICKMEGYQGGKLESDFAS 588
++E L I + + +N + ++ W ++ S++ + ++GG E +F
Sbjct: 363 FPNVEALHI-KYNVDESNGELNSKF--WQEVGHIECVESSIKKVVFDQFRGGANELEFIK 419
Query: 589 AVLVRANRLKRLIIESDKED 608
+L RA L +++ D E+
Sbjct: 420 FILERAQMLDKMVFVVDPEN 439
>Os11g0138225
Length = 464
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 20/211 (9%)
Query: 251 ELIRFQTVVSKPWDAIWREAPLVFCDSFLCPTGDRSGLSQS----ELKDAVASILLNHKG 306
+L +F W ++W PLV D L D G+ + +L DA+ +L NH G
Sbjct: 161 DLYKFGRPAPDFWYSVWMRGPLVLHDKKLLLASDSLGVHRGGEIPDLADAITDVLDNHPG 220
Query: 307 VVSYFRIDSSRSLNLQTLETWFNILSEKKVKEMVLFNCSGPQKLIEFPMDILDGSQVEVL 366
VSYFR+DS+ + L WF LS K V E+ L N P I P+ L + L
Sbjct: 221 PVSYFRVDSTTWTDDNQLVKWFETLSNKSVVEITLLNIGCPVSTI-LPISELLSPNLTTL 279
Query: 367 RICFFKI--PEVYAFDLSKLHLLDFSYCKFDTEHLLHF-VEACPNIRELHLGYYDGNVRI 423
R+ F KI ++ +F+ S L +L C + L + + +IR+L +G N
Sbjct: 280 RVGFMKILDSDLLSFEYSSLSVLQLIGCSYRGADLNYLEIRCVSSIRQLQVGV---NFAE 336
Query: 424 RSDKLEIFQVWCSTMKSVNIEHAPELRKLTI 454
RS + + + +E PEL L I
Sbjct: 337 RSHRASLRNI---------LECFPELSMLVI 358
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 503 NVRKLYIGLSMSKRRQREQLSNILNCLTHLEDLTIWRMDTVANNEDYDAALEDWSPKLRV 562
++R+L +G++ ++R R L NIL C L L IWRMD + ++ D + L
Sbjct: 324 SIRQLQVGVNFAERSHRASLRNILECFPELSMLVIWRMDGIVYDKGSDVLFDSSFVGLGS 383
Query: 563 KTCLKS-LQICKMEGYQGGKLESDFASAVLVRANRLKRLIIESDKEDVFKKAVGILQKVK 621
+C+K+ +Q ++EG++GG E D A +L A+RL + ++ K + V L+++K
Sbjct: 384 VSCVKTRIQYFELEGFRGGPAEMDIARGILRHASRLAKFVLSHHKNYSEEDLVEQLEEIK 443
>Os11g0138200
Length = 464
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 20/211 (9%)
Query: 251 ELIRFQTVVSKPWDAIWREAPLVFCDSFLCPTGDRSGLSQS----ELKDAVASILLNHKG 306
+L +F W ++W PLV D L D G+ + +L DA+ +L NH G
Sbjct: 161 DLYKFGRPAPDFWYSVWMRGPLVLHDKKLLLASDSLGVHRGGEIPDLADAITDVLDNHPG 220
Query: 307 VVSYFRIDSSRSLNLQTLETWFNILSEKKVKEMVLFNCSGPQKLIEFPMDILDGSQVEVL 366
VSYFR+DS+ + L WF LS K V E+ L N P I P+ L + L
Sbjct: 221 PVSYFRVDSTTWTDDNQLVKWFETLSNKSVVEITLLNIGCPVSTI-LPISELLSPNLTTL 279
Query: 367 RICFFKI--PEVYAFDLSKLHLLDFSYCKFDTEHLLHF-VEACPNIRELHLGYYDGNVRI 423
R+ F KI ++ +F+ S L +L C + L + + +IR+L +G N
Sbjct: 280 RVGFMKILDSDLLSFEYSSLSVLQLIGCSYRGADLNYLEIRCVSSIRQLQVGV---NFAE 336
Query: 424 RSDKLEIFQVWCSTMKSVNIEHAPELRKLTI 454
RS + + + +E PEL L I
Sbjct: 337 RSHRASLRNI---------LECFPELSMLVI 358
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 503 NVRKLYIGLSMSKRRQREQLSNILNCLTHLEDLTIWRMDTVANNEDYDAALEDWSPKLRV 562
++R+L +G++ ++R R L NIL C L L IWRMD + ++ D + L
Sbjct: 324 SIRQLQVGVNFAERSHRASLRNILECFPELSMLVIWRMDGIVYDKGSDVLFDSSFVGLGS 383
Query: 563 KTCLKS-LQICKMEGYQGGKLESDFASAVLVRANRLKRLIIESDKEDVFKKAVGILQKVK 621
+C+K+ +Q ++EG++GG E D A +L A+RL + ++ K + V L+++K
Sbjct: 384 VSCVKTRIQYFELEGFRGGPAEMDIARGILRHASRLAKFVLSHHKNYSEEDLVEQLEEIK 443
>Os01g0596100 Cyclin-like F-box domain containing protein
Length = 520
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 93/406 (22%), Positives = 165/406 (40%), Gaps = 43/406 (10%)
Query: 257 TVVSKPWDAIWREAPLVFCDSFLCPTGDRSGL----SQSELKDAVASILLNHKGVVSYFR 312
+S W IW APLV D L P G+ +G + + AV+ +L H G Y
Sbjct: 93 AALSSRWRRIWLSAPLVLVDGHLLPPGEEAGQLALDASGAVAAAVSRVLEAHPGPFRYVE 152
Query: 313 IDSSRSLNLQT----LETWFNILSEKKVKEMVLFNCSGPQKLIEFPMDILDGSQVEVLRI 368
+ S+ ++ + L W ++L+ K V+E+V N P + P + + + L +
Sbjct: 153 LTST-AMGARARRGDLARWLHLLAVKGVRELVFVNRRRPLD-VALPATVFALAPLSRLYL 210
Query: 369 CFFKIPEVYAFDLSK--LHLLDFS-YCKFDTEHLLHFVEACPNIRELHLGYYDGN----V 421
+K P+ A HL + YC + L FV A + E YY +
Sbjct: 211 GTWKFPDTAALPRGAGFPHLRELGLYCVAMEDRDLDFVLANSPVLECLGIYYSQRQIVLL 270
Query: 422 RIRSDKLEIFQVWCSTMKSVNIEHAPELRKLTIAAF--PGKYSSSLSVRVINSL----YL 475
R+ S L Q+ + + + AP L +L I +++ LS+ +L YL
Sbjct: 271 RLASHSLRCVQICMCIAEDIAVVDAPRLERLLIWEMFEDDNHATRLSIGHAPNLQLLGYL 330
Query: 476 EHITCNISNQWITINGSNIQTDDKVLLNVRKLYIGLSMSKRRQREQLSNILNCLTHLEDL 535
+ N I + ++ ++ L + + R + + L + L C ++E L
Sbjct: 331 RPGIHVLENGNTIIKAGTKASPRTIIPSINVLALKVRFEVRNEAKLLPSFLRCFPNVEKL 390
Query: 536 TIWRMDTVANNEDYDAA-----LEDWSPKLRVKTCLKS-LQICKMEGYQGGKLESDFASA 589
+ +E D L+ W R++ CL+S ++ GY+G + E F
Sbjct: 391 HV-------KSEKSDEPVGRLNLKFWQEAGRIE-CLQSCIKYVVFHGYRGDRSELTFLKY 442
Query: 590 VLVRANRLKRLIIE------SDKEDVFKKAVGILQKVKWTSPDVSV 629
+L L+ ++I S +++V +K V L VK S D ++
Sbjct: 443 ILGSGQVLQEMVIVVANGMFSTQDEVGEKLVKPLSSVKMASGDCNI 488
>Os01g0595900 Cyclin-like F-box domain containing protein
Length = 543
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/380 (22%), Positives = 147/380 (38%), Gaps = 33/380 (8%)
Query: 257 TVVSKPWDAIWREAPLVFCDSFLCPTGD---RSGLSQSELKDAVAS----ILLNHKGVVS 309
V+S W +W PLV D L D R G S A AS +L +H+G
Sbjct: 115 AVLSTRWRRVWASTPLVLDDVDLLDIPDEDLRRGHSHRVDLAAAASRVTRVLTSHRGPYL 174
Query: 310 YFRIDS-SRSLNLQTLETWFNILSEKKVKEMVLFNCSGPQKLIEFPMDILDGSQVEVLRI 368
+ + + + L W ++L+ V+++V N P L P+DIL + L +
Sbjct: 175 CVHLTCCNMATHWPMLSYWLSLLAANGVQDLVFANRPYPLDL-PLPVDILRIPSLRSLYL 233
Query: 369 CFFKIPEVYA-----FDLSKLHLLDFSYCKFDTEHLLHFVEACPNIRELHL---GYYDGN 420
F+ P + L L + D + L ++ P + L L Y +
Sbjct: 234 AFWTFPGIPGGARGPHVFPHLRELGLCFISIDAQDLDGLLQCSPVLETLALVSNSYSPAH 293
Query: 421 VRIRSDKLEIFQVWCSTMKSVNIEHAPELRKL----TIAAFPG--------KYSSSLSVR 468
+R+RS L W S + + + AP L +L T FPG K + +R
Sbjct: 294 IRVRSRTLRCVLFWMSLAQEIALVVAPRLDRLILWKTFMGFPGEIFCRTRVKIGYATELR 353
Query: 469 VINSLYLEHITCNISNQWITINGSNIQTDDKVLLNVRKLYIGLSMSKRRQREQLSNILNC 528
V+ L I N TI + DK + +V+ L + + R + + L L C
Sbjct: 354 VLGYLEPRMHELEIGNT--TIEAGTKMSSDKTVPSVKILALKVRFGIRNEAKLLPVFLRC 411
Query: 529 LTHLEDLTIWRMDTVANNEDYDAALEDWSPKLRVKTCLKSLQICKMEGYQGGKLESDFAS 588
++E L + M A++ L+ W ++ + ++G + E F
Sbjct: 412 FPNVETLHV--MSDDAHDPTGKLNLKFWHDVGPIECLHSHVNKVVFHMFRGERSELAFLK 469
Query: 589 AVLVRANRLKRLIIESDKED 608
+L RA L+++++ D
Sbjct: 470 FILERAEALQKIVVVLANRD 489
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,087,902
Number of extensions: 734277
Number of successful extensions: 1922
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1911
Number of HSP's successfully gapped: 10
Length of query: 639
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 532
Effective length of database: 11,448,903
Effective search space: 6090816396
Effective search space used: 6090816396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)