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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0595900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.8 (0.0344) R2 : 0.153
β1 : 0.0178 (0.126) R2dD : 3.47e-05 R2D : -0.000765
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.06 (0.374) R2dE : 0.0558 R2E : 0.0535
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.61 (1.19) R2dD*E : 0.0975 R2D*E : 0.0957
γ1 : 0.0713 (0.0736) R2dN8 : 0.0023 R2N8 : 0.000165
σ : 0.643
deviance : 190.76
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 91.02
memory length : 82
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20
open length of G : 1.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.11 0.648 2.8 0.00959 0.0459 2.09 0.401 -8.66 0.0687 15.1 91 83 20 1.06
208.81 0.673 2.79 0.0088 0.0594 2.33 0.595 -- 0.0993 13.4 91.18 75 20.1 0.716
190.47 0.643 2.8 0.024 0.0611 2.07 -- -8.58 0.0709 11.7 91.04 82 20 1.07
209.92 0.675 2.8 -0.0128 0.0451 2.32 -- -- 0.099 11.6 91.28 75 20.1 0.709
190.76 0.643 2.8 0.0178 -- 2.06 -- -8.61 0.0713 -- 91.02 82 20 1.07
223.44 0.701 2.81 -0.0685 0.0163 -- 0.585 -- 0.0311 12.5 -- -- -- --
224.86 0.702 2.81 -0.0453 0.034 -- -- -- 0.0347 16.7 -- -- -- --
209.89 0.675 2.79 -0.0594 -- 2.4 -- -- 0.0887 -- 91.77 75 20 0.734
209.86 0.675 2.8 -- 0.0394 2.36 -- -- 0.0905 11.5 91.32 75 20 0.726
224.92 0.701 2.81 -0.0466 -- -- -- -- 0.0338 -- -- -- -- --
224.91 0.702 2.81 -- 0.0348 -- -- -- 0.0397 16.7 -- -- -- --
209.82 0.675 2.8 -- -- 2.45 -- -- 0.084 -- 91.79 75 20 0.748
224.98 0.7 2.81 -- -- -- -- -- 0.0389 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.89 humidity 90.0 90 > th dose dependent rect. 20 1
18 196.78 humidity 90.0 90 > th dose independent rect. 21 1
21 197.13 humidity 90.0 10 > th dose independent rect. 22 1
62 200.90 humidity 50.0 30 < th dose independent rect. 15 1
64 200.94 humidity 50.0 10 < th dose dependent rect. 15 1
74 202.30 humidity 90.0 30 > th dose dependent rect. 8 15
83 202.70 atmosphere 1000.0 10 < th dose independent rect. 17 3
88 202.70 atmosphere 1000.0 10 < th dose dependent rect. 17 3
96 202.72 atmosphere 1000.0 10 < th dose independent rect. 17 1
109 202.72 atmosphere 1000.0 10 < th dose dependent rect. 17 1
262 204.56 wind 1.0 10 < th dose independent rect. 14 2
264 204.56 wind 1.0 10 < th dose dependent rect. 14 2
372 205.41 humidity 50.0 90 < th dose dependent sin 12 NA
388 206.18 humidity 50.0 90 < th dose independent sin 12 NA
394 206.43 humidity 90.0 10 > th dose dependent rect. 6 17
396 206.57 humidity 50.0 90 > th dose independent sin 12 NA
467 208.65 temperature 25.0 90 < th dose dependent rect. 20 1
512 209.27 atmosphere 1000.0 10 < th dose independent rect. 8 2
514 209.27 humidity 90.0 90 > th dose independent rect. 15 7
515 209.28 atmosphere 1000.0 90 < th dose independent rect. 8 1
549 209.46 atmosphere 1000.0 10 < th dose independent rect. 6 5
550 209.47 atmosphere 1000.0 270 < th dose independent rect. 6 1
643 210.08 humidity 50.0 270 > th dose independent rect. 24 23
651 210.13 atmosphere 1000.0 90 < th dose dependent rect. 9 1
722 210.71 atmosphere 1010.0 30 < th dose dependent rect. 20 3
729 210.80 temperature 30.0 90 > th dose independent rect. 14 1
737 210.88 temperature 25.0 10 > th dose independent rect. 5 1
738 210.90 atmosphere 1000.0 270 < th dose dependent rect. 6 1
825 211.73 atmosphere 1005.0 90 < th dose independent rect. 20 1
833 211.79 temperature 25.0 90 < th dose independent rect. 20 1
846 211.85 wind 7.0 90 < th dose independent rect. 20 2
852 211.97 humidity 80.0 270 > th dose independent rect. 18 1
959 212.53 wind 1.0 90 > th dose independent rect. 20 2
960 212.53 atmosphere 1000.0 90 > th dose independent rect. 22 22
969 212.59 wind 9.0 90 < th dose dependent rect. 20 2
994 212.69 precipitation 0.1 90 < th dose independent rect. 20 2
995 212.69 precipitation 0.1 90 < th dose dependent rect. 20 2