Os01g0596000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os01g0596000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.33 | 0.471 | 3.23 | -0.926 | 0.232 | 1.66 | -0.241 | -2.49 | -0.206 | 8.1 | 18.2 | 721 | -- | -- |
| 107.13 | 0.482 | 3.27 | -1.06 | 0.23 | 2.36 | -0.622 | -- | -0.242 | 7.98 | 18 | 696 | -- | -- |
| 100.5 | 0.467 | 3.23 | -0.927 | 0.231 | 1.66 | -- | -2.53 | -0.208 | 8.22 | 18.2 | 720 | -- | -- |
| 108.26 | 0.485 | 3.27 | -1.07 | 0.222 | 2.39 | -- | -- | -0.237 | 7.61 | 18.09 | 704 | -- | -- |
| 103.38 | 0.474 | 3.23 | -0.896 | -- | 1.72 | -- | -2.51 | -0.19 | -- | 18.22 | 720 | -- | -- |
| 165.5 | 0.603 | 3.32 | -1.66 | 0.384 | -- | -0.973 | -- | -0.474 | 9.13 | -- | -- | -- | -- |
| 168.79 | 0.608 | 3.32 | -1.69 | 0.386 | -- | -- | -- | -0.474 | 9.37 | -- | -- | -- | -- |
| 110.77 | 0.49 | 3.28 | -1.04 | -- | 2.41 | -- | -- | -0.224 | -- | 18.2 | 695 | -- | -- |
| 133.69 | 0.539 | 3.24 | -- | 0.18 | 2.93 | -- | -- | -0.074 | 7.23 | 18.2 | 694 | -- | -- |
| 177.48 | 0.623 | 3.33 | -1.7 | -- | -- | -- | -- | -0.472 | -- | -- | -- | -- | -- |
| 244.46 | 0.731 | 3.28 | -- | 0.388 | -- | -- | -- | -0.285 | 9.7 | -- | -- | -- | -- |
| 135.14 | 0.541 | 3.24 | -- | -- | 2.77 | -- | -- | -0.0569 | -- | 18.4 | 693 | -- | -- |
| 253.41 | 0.743 | 3.29 | -- | -- | -- | -- | -- | -0.284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.38 | temperature | 20 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 5 | 100.57 | temperature | 20 | 720 | < th | dose dependent | sin | 12 | NA |
| 18 | 100.95 | temperature | 20 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 25 | 101.10 | temperature | 20 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 45 | 101.35 | temperature | 20 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 61 | 101.55 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 241 | 105.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 242 | 106.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 280 | 106.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 356 | 108.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 368 | 108.36 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 445 | 108.96 | temperature | 25 | 1440 | < th | dose dependent | sin | 3 | NA |
| 470 | 109.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 8 |
| 494 | 109.32 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 588 | 109.98 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 711 | 110.86 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 21 |
| 778 | 111.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 779 | 111.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 781 | 111.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 874 | 111.81 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 20 |
| 915 | 111.98 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |