Os12g0140300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0140300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.72 | 0.277 | 8.3 | 1.13 | 0.402 | 0.696 | -0.0919 | 1.54 | 0.39 | 22.9 | 1010 | 6613 | -- | -- |
| 38.5 | 0.289 | 8.25 | 1.51 | 0.394 | 0.534 | -0.0437 | -- | 0.469 | 22.7 | 1010 | 9707 | -- | -- |
| 34.75 | 0.275 | 8.3 | 1.14 | 0.402 | 0.701 | -- | 1.56 | 0.391 | 22.8 | 1010 | 6685 | -- | -- |
| 38.49 | 0.289 | 8.25 | 1.51 | 0.393 | 0.533 | -- | -- | 0.468 | 22.8 | 1010 | 9707 | -- | -- |
| 44.59 | 0.311 | 8.28 | 1.17 | -- | 0.693 | -- | 1.4 | 0.401 | -- | 1010 | 5789 | -- | -- |
| 48.71 | 0.327 | 8.28 | 1.31 | 0.387 | -- | -0.113 | -- | 0.339 | 22.7 | -- | -- | -- | -- |
| 48.76 | 0.327 | 8.28 | 1.31 | 0.389 | -- | -- | -- | 0.339 | 22.6 | -- | -- | -- | -- |
| 48.05 | 0.323 | 8.24 | 1.51 | -- | 0.52 | -- | -- | 0.47 | -- | 1010 | 9775 | -- | -- |
| 92.51 | 0.448 | 8.3 | -- | 0.41 | 0.319 | -- | -- | 0.233 | 22.9 | 1008 | 16010 | -- | -- |
| 58.05 | 0.356 | 8.27 | 1.32 | -- | -- | -- | -- | 0.341 | -- | -- | -- | -- | -- |
| 94.04 | 0.454 | 8.31 | -- | 0.398 | -- | -- | -- | 0.193 | 22.8 | -- | -- | -- | -- |
| 95.32 | 0.455 | 8.29 | -- | -- | -0.767 | -- | -- | 0.235 | -- | 1004 | 47520 | -- | -- |
| 103.86 | 0.476 | 8.3 | -- | -- | -- | -- | -- | 0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.12 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 2 | 33.17 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 3 | 33.17 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 4 | 33.17 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 6 | 33.19 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 37 | 33.27 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 13 | 17 |
| 38 | 33.28 | radiation | 10.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 40 | 33.28 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 53 | 33.28 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 61 | 33.28 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 13 | 16 |
| 67 | 33.31 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 13 | 4 |
| 130 | 33.38 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 15 | 5 |
| 131 | 33.38 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 15 | 9 |
| 169 | 33.41 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 200 | 33.43 | radiation | 20.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 413 | 33.58 | radiation | 10.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 519 | 33.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 14 |
| 526 | 33.69 | radiation | 20.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 856 | 33.95 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 975 | 34.01 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 0 | NA |