BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0128600 Os12g0128600|AK120379
         (78 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0128600  Zinc finger, Tim10/DDP-type family protein          159   3e-40
Os11g0130900  Zinc finger, Tim10/DDP-type family protein          126   4e-30
Os08g0535600  Zinc finger, Tim10/DDP-type family protein           80   3e-16

>Os12g0128600 Zinc finger, Tim10/DDP-type family protein
          Length = 78

 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MDASALSNPRLQAMLEEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCA 60
          MDASALSNPRLQAMLEEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCA
Sbjct: 1  MDASALSNPRLQAMLEEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCA 60

Query: 61 KRFLELKMLTMQRVSSPR 78
          KRFLELKMLTMQRVSSPR
Sbjct: 61 KRFLELKMLTMQRVSSPR 78



>Os11g0130900 Zinc finger, Tim10/DDP-type family protein
          Length = 96

 Score =  126 bits (316), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 60/63 (95%), Positives = 61/63 (96%)

Query: 16 EEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFLELKMLTMQRVS 75
          EEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRF ELKML +QRVS
Sbjct: 34 EEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFFELKMLIVQRVS 93

Query: 76 SPR 78
          SPR
Sbjct: 94 SPR 96



>Os08g0535600 Zinc finger, Tim10/DDP-type family protein
          Length = 73

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 49/63 (77%)

Query: 11 LQAMLEEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFLELKMLT 70
          +Q  +E+E++KAM +E V KLT VCWDKCIT + GS FS+ E +CL+NCA+RFL++ ++ 
Sbjct: 7  MQRFIEQEQQKAMVSEMVGKLTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFLDMSVII 66

Query: 71 MQR 73
           +R
Sbjct: 67 AKR 69



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.124    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,203,901
Number of extensions: 63465
Number of successful extensions: 242
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 3
Length of query: 78
Length of database: 17,035,801
Length adjustment: 49
Effective length of query: 29
Effective length of database: 14,477,315
Effective search space: 419842135
Effective search space used: 419842135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)