Os12g0128600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, Tim10/DDP-type family protein.
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Os12g0128600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, Tim10/DDP-type family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.75 | 0.243 | 10.5 | 0.455 | 0.135 | -0.443 | 0.346 | 1.12 | -0.0613 | 12.6 | 33 | 1070 | -- | -- |
| 26.78 | 0.241 | 10.5 | 0.296 | 0.132 | -0.314 | 0.344 | -- | -0.0609 | 12.4 | 32.9 | 1070 | -- | -- |
| 27.23 | 0.243 | 10.5 | 0.461 | 0.136 | -0.442 | -- | 1.05 | -0.0598 | 13.2 | 32.95 | 1061 | -- | -- |
| 27.26 | 0.243 | 10.5 | 0.311 | 0.134 | -0.324 | -- | -- | -0.0612 | 13.2 | 32.84 | 1060 | -- | -- |
| 28.32 | 0.248 | 10.5 | 0.478 | -- | -0.477 | -- | 1.13 | -0.0641 | -- | 32.85 | 1059 | -- | -- |
| 31.44 | 0.263 | 10.5 | 0.223 | 0.182 | -- | 0.423 | -- | -0.00993 | 12.7 | -- | -- | -- | -- |
| 32.18 | 0.266 | 10.5 | 0.24 | 0.182 | -- | -- | -- | -0.00735 | 13.1 | -- | -- | -- | -- |
| 28.33 | 0.248 | 10.5 | 0.314 | -- | -0.349 | -- | -- | -0.0687 | -- | 32.48 | 1067 | -- | -- |
| 29.76 | 0.254 | 10.5 | -- | 0.143 | -0.282 | -- | -- | -0.0826 | 13 | 32.81 | 1049 | -- | -- |
| 34.24 | 0.273 | 10.5 | 0.233 | -- | -- | -- | -- | -0.011 | -- | -- | -- | -- | -- |
| 33.69 | 0.272 | 10.5 | -- | 0.178 | -- | -- | -- | -0.034 | 13 | -- | -- | -- | -- |
| 30.83 | 0.259 | 10.5 | -- | -- | -0.313 | -- | -- | -0.0949 | -- | 32.98 | 1058 | -- | -- |
| 35.67 | 0.279 | 10.5 | -- | -- | -- | -- | -- | -0.0368 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.89 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 2 | 23.30 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 4 | 23.41 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 7 | 23.47 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 10 | 23.53 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 12 | 23.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 16 |
| 13 | 23.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 14 | 23.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 17 | 23.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 21 | 23.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 23 | 23.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 28 | 23.65 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 29 | 23.66 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 32 | 23.72 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 34 | 23.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 35 | 23.75 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 36 | 23.75 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 38 | 23.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 40 | 23.78 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 43 | 23.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 8 |
| 45 | 23.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 46 | 23.81 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 49 | 23.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 52 | 23.88 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 56 | 23.90 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 61 | 23.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 18 |
| 63 | 23.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 8 |
| 64 | 23.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 67 | 23.99 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 75 | 24.04 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 84 | 24.06 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 87 | 24.06 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 93 | 24.09 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 104 | 24.11 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 108 | 24.11 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 109 | 24.11 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 116 | 24.11 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 117 | 24.11 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 125 | 24.11 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 128 | 24.13 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 131 | 24.13 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 137 | 24.17 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 148 | 24.27 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 150 | 24.28 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 16 |
| 167 | 24.32 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 195 | 24.35 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 205 | 24.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 17 |
| 219 | 24.41 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 234 | 24.45 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 17 |
| 257 | 24.51 | radiation | 1.0 | 90 | < th | dose independent | rect. | 13 | 14 |
| 259 | 24.51 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 316 | 24.60 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 16 |
| 400 | 24.75 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 414 | 24.79 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 484 | 24.93 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 506 | 24.96 | wind | 9.0 | 10 | < th | dose dependent | rect. | 3 | 16 |
| 528 | 25.00 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 548 | 25.03 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 7 |
| 567 | 25.07 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 19 | 7 |
| 588 | 25.11 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 7 |
| 589 | 25.11 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 602 | 25.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 17 |
| 605 | 25.13 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 619 | 25.14 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 624 | 25.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 627 | 25.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 629 | 25.15 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 668 | 25.18 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 686 | 25.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 688 | 25.20 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 689 | 25.20 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 692 | 25.20 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 693 | 25.20 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 695 | 25.20 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 704 | 25.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 705 | 25.20 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 714 | 25.21 | radiation | 40.0 | 90 | < th | dose independent | rect. | 14 | 16 |
| 755 | 25.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 756 | 25.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 8 |
| 766 | 25.27 | wind | 9.0 | 90 | < th | dose dependent | rect. | 19 | 7 |
| 795 | 25.30 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 16 |
| 807 | 25.32 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 810 | 25.32 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 814 | 25.32 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 816 | 25.32 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 817 | 25.32 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 837 | 25.32 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 841 | 25.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 855 | 25.33 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 884 | 25.35 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 15 |
| 897 | 25.36 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 8 |
| 898 | 25.36 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 17 |
| 914 | 25.38 | wind | 9.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 948 | 25.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 7 |
| 953 | 25.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 986 | 25.45 | wind | 7.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 990 | 25.45 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 4 |