Os11g0130900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, Tim10/DDP-type family protein.
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Os11g0130900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, Tim10/DDP-type family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.66 | 0.563 | 3.47 | 0.364 | 0.286 | 1.17 | 0.273 | -0.953 | 0.122 | 7.47 | 24.6 | 1625 | -- | -- |
| 146.35 | 0.563 | 3.46 | 0.28 | 0.255 | 1.18 | 0.117 | -- | 0.0825 | 7.12 | 24.6 | 1624 | -- | -- |
| 143.86 | 0.559 | 3.47 | 0.366 | 0.286 | 1.17 | -- | -0.941 | 0.12 | 7.48 | 24.61 | 1624 | -- | -- |
| 145.27 | 0.561 | 3.47 | 0.105 | 0.327 | 1.13 | -- | -- | 0.064 | 7.55 | 24.7 | 1624 | -- | -- |
| 147.5 | 0.566 | 3.48 | 0.38 | -- | 1.19 | -- | -0.935 | 0.122 | -- | 24.7 | 1790 | -- | -- |
| 181.37 | 0.631 | 3.59 | -0.319 | 0.322 | -- | 0.243 | -- | -0.359 | 7.45 | -- | -- | -- | -- |
| 181.53 | 0.631 | 3.59 | -0.314 | 0.322 | -- | -- | -- | -0.359 | 7.47 | -- | -- | -- | -- |
| 148.47 | 0.567 | 3.51 | 0.0944 | -- | 1.14 | -- | -- | 0.0279 | -- | 24.67 | 1872 | -- | -- |
| 145.35 | 0.562 | 3.48 | -- | 0.333 | 1.12 | -- | -- | 0.0526 | 7.51 | 24.6 | 1614 | -- | -- |
| 187.09 | 0.639 | 3.6 | -0.309 | -- | -- | -- | -- | -0.354 | -- | -- | -- | -- | -- |
| 184.13 | 0.635 | 3.58 | -- | 0.32 | -- | -- | -- | -0.325 | 7.53 | -- | -- | -- | -- |
| 148.68 | 0.568 | 3.52 | -- | -- | 1.11 | -- | -- | 0.00962 | -- | 24.67 | 1872 | -- | -- |
| 189.6 | 0.643 | 3.59 | -- | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 3 | 144.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 14 | 144.72 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 18 | 144.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 27 | 145.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 5 |
| 34 | 145.08 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 20 |
| 124 | 145.93 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 168 | 146.17 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 180 | 146.23 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 189 | 146.27 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 12 |
| 193 | 146.28 | temperature | 25 | 4320 | < th | dose independent | sin | 17 | NA |
| 198 | 146.30 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 22 |
| 226 | 146.39 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 227 | 146.39 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 243 | 146.43 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 276 | 146.52 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 297 | 146.58 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 305 | 146.61 | temperature | 25 | 4320 | > th | dose independent | sin | 17 | NA |
| 333 | 146.66 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 338 | 146.67 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 350 | 146.69 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 396 | 146.79 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 398 | 146.80 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 439 | 146.92 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 494 | 147.09 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 496 | 147.10 | temperature | 25 | 1440 | > th | dose independent | rect. | 3 | 11 |
| 499 | 147.11 | temperature | 25 | 1440 | < th | dose independent | sin | 3 | NA |
| 516 | 147.14 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 538 | 147.19 | temperature | 25 | 1440 | > th | dose independent | sin | 2 | NA |
| 762 | 147.69 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |