BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0123100 Os12g0123100|AK070039
         (292 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0123100  Conserved hypothetical protein                      558   e-159
Os11g0125500  Protein prenyltransferase domain containing pr...   511   e-145
Os01g0757700  Conserved hypothetical protein                      105   3e-23

>Os12g0123100 Conserved hypothetical protein
          Length = 292

 Score =  558 bits (1439), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 272/292 (93%), Positives = 272/292 (93%)

Query: 1   MLGHLRRSSQRLPVANLAVYSIQSSHIEFIAGWCRNHSTRNFSVDTSNKVSNDRGYQSRE 60
           MLGHLRRSSQRLPVANLAVYSIQSSHIEFIAGWCRNHSTRNFSVDTSNKVSNDRGYQSRE
Sbjct: 1   MLGHLRRSSQRLPVANLAVYSIQSSHIEFIAGWCRNHSTRNFSVDTSNKVSNDRGYQSRE 60

Query: 61  LKPSLVKDDVAIIKHIQNSTKELKQGPVGKNLSSAEKRKFLVNTLLDLEDSKEGVYSTLD 120
           LKPSLVKDDVAIIKHIQNSTKELKQGPVGKNLSSAEKRKFLVNTLLDLEDSKEGVYSTLD
Sbjct: 61  LKPSLVKDDVAIIKHIQNSTKELKQGPVGKNLSSAEKRKFLVNTLLDLEDSKEGVYSTLD 120

Query: 121 AWVAFEQEFPVASLKQALVALEKEEQWHRIVQVIKWMLSKGQGKTIRTYEQLVCALEKDN 180
           AWVAFEQEFPVASLKQALVALEKEEQWHRIVQVIKWMLSKGQGKTIRTYEQLVCALEKDN
Sbjct: 121 AWVAFEQEFPVASLKQALVALEKEEQWHRIVQVIKWMLSKGQGKTIRTYEQLVCALEKDN 180

Query: 181 RADEACRIWELKIAHDLQSVPWRFCRLMLGIYYRNNRLDTLVKLFKNLEACGRKPPSKDI 240
           RADEACRIWELKIAHDLQSVPWRFCRLMLGIYYRNNRLDTLVKLFKNLEACGRKPPSKDI
Sbjct: 181 RADEACRIWELKIAHDLQSVPWRFCRLMLGIYYRNNRLDTLVKLFKNLEACGRKPPSKDI 240

Query: 241 VRKVEDTYEMXXXXXXXXXXXXXXXXXXXXPSSNDRKKGRQFKKAEKNTKTG 292
           VRKVEDTYEM                    PSSNDRKKGRQFKKAEKNTKTG
Sbjct: 241 VRKVEDTYEMLGLVEEKKELLEKYKELFDKPSSNDRKKGRQFKKAEKNTKTG 292



>Os11g0125500 Protein prenyltransferase domain containing protein
          Length = 292

 Score =  511 bits (1316), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/292 (84%), Positives = 258/292 (88%)

Query: 1   MLGHLRRSSQRLPVANLAVYSIQSSHIEFIAGWCRNHSTRNFSVDTSNKVSNDRGYQSRE 60
           MLGHLRRSS R+ +ANLAVYSIQSS IEFIAGWC NH+TRNFS DTSN+VSNDRG+QSRE
Sbjct: 1   MLGHLRRSSHRVLIANLAVYSIQSSQIEFIAGWCSNHTTRNFSADTSNRVSNDRGHQSRE 60

Query: 61  LKPSLVKDDVAIIKHIQNSTKELKQGPVGKNLSSAEKRKFLVNTLLDLEDSKEGVYSTLD 120
           LKPSLVKDDVAII+ IQNSTKEL+QGPVGKNLSSAEKRKFLVNTLLDLEDSKEGVYSTLD
Sbjct: 61  LKPSLVKDDVAIIERIQNSTKELRQGPVGKNLSSAEKRKFLVNTLLDLEDSKEGVYSTLD 120

Query: 121 AWVAFEQEFPVASLKQALVALEKEEQWHRIVQVIKWMLSKGQGKTIRTYEQLVCALEKDN 180
           AWVAFEQ+FPVAS+KQALVALEKEEQWHRIVQVIKWM SKGQGKTIRTYEQLVCALEKDN
Sbjct: 121 AWVAFEQDFPVASIKQALVALEKEEQWHRIVQVIKWMSSKGQGKTIRTYEQLVCALEKDN 180

Query: 181 RADEACRIWELKIAHDLQSVPWRFCRLMLGIYYRNNRLDTLVKLFKNLEACGRKPPSKDI 240
           RADEACRIWE KIAHDLQSVPWRFCRLMLGIYYRNN+LD LVKLFKNLEACGRKPPSKDI
Sbjct: 181 RADEACRIWEFKIAHDLQSVPWRFCRLMLGIYYRNNKLDRLVKLFKNLEACGRKPPSKDI 240

Query: 241 VRKVEDTYEMXXXXXXXXXXXXXXXXXXXXPSSNDRKKGRQFKKAEKNTKTG 292
           VRKVED YEM                    PSSND+KKGRQFKK EKN K  
Sbjct: 241 VRKVEDAYEMLGLVEEKKELLEKYKDLFDKPSSNDKKKGRQFKKVEKNIKPA 292



>Os01g0757700 Conserved hypothetical protein
          Length = 213

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 88/137 (64%), Gaps = 3/137 (2%)

Query: 90  KNLSSAEKRKFLVNTLLDLEDSKEGVYSTLDAWVAFEQEFPVASLKQALVALEKEEQWHR 149
           K + +  K + LV  +  L + KE VY  LD++VA+E EFP+ ++K+AL  LE E++W R
Sbjct: 49  KRIGTVSKSQKLVECVKGLSNVKEEVYGALDSFVAWELEFPLIAVKKALKTLEDEKEWKR 108

Query: 150 IVQVIKWMLSKGQGKTIRTYEQLVCALEKDNRADEACRIWELKIAHDLQSVPWRFCRLML 209
           I+QVIKWM +KGQGKT+ +Y  L+ AL +D R +EA  ++    +  L+ +P  F   M+
Sbjct: 109 IIQVIKWMFNKGQGKTMGSYYTLLNALIEDGRVEEAEELYGKIFSRYLEGLPHTFFMRMI 168

Query: 210 GIYYRNNRLDTLVKLFK 226
            +YY   RL++  K+F+
Sbjct: 169 SLYY---RLESYQKMFE 182



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,774,722
Number of extensions: 327176
Number of successful extensions: 1011
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1009
Number of HSP's successfully gapped: 3
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)