Os11g0125500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os11g0125500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.76 | 0.381 | 9.57 | -0.776 | 1.21 | -0.352 | 0.671 | -0.307 | -0.23 | 21.9 | 72 | 71 | -- | -- |
| 66.12 | 0.379 | 9.57 | -0.79 | 1.21 | -0.344 | 0.522 | -- | -0.232 | 21.8 | 72.58 | 67 | -- | -- |
| 67.13 | 0.382 | 9.57 | -0.803 | 1.2 | -0.338 | -- | -0.0639 | -0.234 | 21.8 | 72.68 | 80 | -- | -- |
| 67.04 | 0.381 | 9.58 | -0.825 | 1.16 | -0.334 | -- | -- | -0.252 | 21.8 | 72 | 125 | -- | -- |
| 106 | 0.48 | 9.57 | -0.819 | -- | -0.91 | -- | 0.758 | -0.213 | -- | 76.96 | 721 | -- | -- |
| 71.41 | 0.396 | 9.57 | -0.759 | 1.15 | -- | 0.482 | -- | -0.23 | 20.9 | -- | -- | -- | -- |
| 72.18 | 0.398 | 9.57 | -0.775 | 1.15 | -- | -- | -- | -0.23 | 20.8 | -- | -- | -- | -- |
| 100.25 | 0.466 | 9.55 | -0.888 | -- | -1.22 | -- | -- | -0.29 | -- | 74 | 773 | -- | -- |
| 83.58 | 0.426 | 9.55 | -- | 1.16 | -0.338 | -- | -- | -0.15 | 21.7 | 72.41 | 147 | -- | -- |
| 148.12 | 0.569 | 9.54 | -0.775 | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
| 87.99 | 0.439 | 9.55 | -- | 1.16 | -- | -- | -- | -0.143 | 20.8 | -- | -- | -- | -- |
| 120.65 | 0.512 | 9.55 | -- | -- | -0.984 | -- | -- | -0.29 | -- | 87.63 | 635 | -- | -- |
| 163.97 | 0.598 | 9.52 | -- | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.40 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 2 | 57.54 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 8 | 58.31 | radiation | 20.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 13 | 58.84 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 22 | 59.34 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 19 |
| 45 | 59.80 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 49 | 59.90 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 19 |
| 60 | 60.15 | radiation | 1.0 | 90 | < th | dose independent | sin | 8 | NA |
| 68 | 60.25 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 19 |
| 69 | 60.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 4 |
| 71 | 60.31 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 20 |
| 76 | 60.35 | radiation | 30.0 | 270 | < th | dose independent | rect. | 4 | 5 |
| 81 | 60.39 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 10 |
| 82 | 60.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 19 |
| 83 | 60.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 19 |
| 92 | 60.48 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 94 | 60.50 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 19 |
| 98 | 60.54 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 110 | 60.55 | radiation | 1.0 | 90 | > th | dose independent | sin | 8 | NA |
| 112 | 60.57 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 17 |
| 116 | 60.62 | humidity | 90.0 | 90 | < th | dose independent | rect. | 6 | 3 |
| 128 | 60.72 | humidity | 60.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 132 | 60.73 | humidity | 70.0 | 10 | > th | dose independent | rect. | 6 | 19 |
| 138 | 60.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 19 |
| 151 | 60.88 | wind | 7.0 | 270 | < th | dose independent | rect. | 4 | 5 |
| 159 | 60.93 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 160 | 60.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 5 |
| 171 | 60.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 5 |
| 172 | 60.93 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 6 |
| 178 | 60.95 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 19 |
| 182 | 60.95 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 186 | 60.97 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 189 | 60.97 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 190 | 60.97 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 5 |
| 202 | 61.03 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 5 |
| 222 | 61.10 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 2 |
| 240 | 61.20 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 243 | 61.22 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 246 | 61.23 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 262 | 61.25 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 10 |
| 270 | 61.28 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 283 | 61.34 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 300 | 61.37 | humidity | 80.0 | 270 | > th | dose independent | rect. | 4 | 13 |
| 303 | 61.37 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 6 | 13 |
| 315 | 61.41 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 4 |
| 330 | 61.46 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 333 | 61.49 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 7 |
| 341 | 61.50 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 357 | 61.54 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 10 |
| 370 | 61.56 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 388 | 61.59 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 389 | 61.59 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 408 | 61.65 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 420 | 61.69 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 11 | 18 |
| 433 | 61.72 | radiation | 1.0 | 90 | < th | dose independent | rect. | 24 | 7 |
| 435 | 61.72 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 18 |
| 447 | 61.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 4 |
| 450 | 61.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 454 | 61.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 456 | 61.77 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 457 | 61.77 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 460 | 61.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 461 | 61.77 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 466 | 61.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 467 | 61.77 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 468 | 61.77 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 473 | 61.77 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 501 | 61.84 | temperature | 25.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 506 | 61.84 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 24 | 14 |
| 520 | 61.90 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 13 |
| 525 | 61.91 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 24 | 10 |
| 528 | 61.92 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 535 | 61.92 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 19 |
| 544 | 61.94 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 549 | 61.96 | wind | 5.0 | 90 | < th | dose independent | rect. | 6 | 3 |
| 558 | 61.97 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 19 |
| 561 | 61.98 | radiation | 1.0 | 90 | < th | dose independent | rect. | 24 | 14 |
| 605 | 62.05 | radiation | 1.0 | 90 | < th | dose independent | rect. | 24 | 10 |
| 623 | 62.07 | wind | 9.0 | 90 | < th | dose dependent | rect. | 6 | 3 |
| 633 | 62.09 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 642 | 62.11 | humidity | 60.0 | 90 | > th | dose independent | rect. | 6 | 3 |
| 643 | 62.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 645 | 62.11 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 657 | 62.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 15 |
| 658 | 62.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 20 |
| 660 | 62.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 673 | 62.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 17 |
| 691 | 62.21 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 3 |
| 693 | 62.21 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 3 |
| 700 | 62.23 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 3 |
| 703 | 62.23 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 6 | 3 |
| 704 | 62.23 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 6 | 3 |
| 706 | 62.23 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 18 |
| 745 | 62.29 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 751 | 62.30 | humidity | 60.0 | 10 | > th | dose independent | rect. | 5 | 7 |
| 769 | 62.33 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 6 |
| 772 | 62.33 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 6 |
| 776 | 62.34 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 9 |
| 785 | 62.35 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 6 | 18 |
| 786 | 62.36 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 6 |
| 788 | 62.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 6 |
| 789 | 62.36 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 6 |
| 792 | 62.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 6 |
| 793 | 62.36 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 6 |
| 800 | 62.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 18 |
| 802 | 62.36 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 6 |
| 844 | 62.41 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 859 | 62.42 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 876 | 62.46 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 19 |
| 893 | 62.47 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 14 | 10 |
| 899 | 62.48 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 914 | 62.50 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 932 | 62.52 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 22 | 11 |
| 981 | 62.57 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 6 |