BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0125500 Os11g0125500|AK069138
         (292 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04590.2  | chr1:1258760-1261411 REVERSE LENGTH=385            205   2e-53
AT4G21190.1  | chr4:11292493-11293763 REVERSE LENGTH=308          121   4e-28
AT4G18975.1  | chr4:10392170-10393665 REVERSE LENGTH=288          119   2e-27

>AT1G04590.2 | chr1:1258760-1261411 REVERSE LENGTH=385
          Length = 384

 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/168 (58%), Positives = 126/168 (75%), Gaps = 3/168 (1%)

Query: 84  RQGPVGKNLSSAEKRKFLVNTLLDLEDSKEGVYSTLDAWVAFEQDFPVASIKQALVALEK 143
           R+  +G+N+   +K KFLVNTLLD+ED+KE VY  LDAWVA+E++FP+AS+K  + +LEK
Sbjct: 132 RKHQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEK 191

Query: 144 EEQWHRIVQVIKWMSSKGQGKTIRTYEQLVCALEKDNRADEACRIWEFKIAHDLQSVPWR 203
           E QWHR+VQVIKW+ SKGQG T+ TY QL+ AL+ D RA+EA  IW  K+ +DL SVPW+
Sbjct: 192 EHQWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQ 251

Query: 204 FCRLMLGIYYRNNKLDRLV---KLFKNLEACGRKPPSKDIVRKVEDAY 248
            C  M+ IY+RNN L  LV   KLFK+LE+  RKPP K IV+ V DAY
Sbjct: 252 LCLQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAY 299



>AT4G21190.1 | chr4:11292493-11293763 REVERSE LENGTH=308
          Length = 307

 Score =  121 bits (304), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 91/146 (62%)

Query: 90  KNLSSAEKRKFLVNTLLDLEDSKEGVYSTLDAWVAFEQDFPVASIKQALVALEKEEQWHR 149
           K + +  K   ++  +  L + KE VY  LD+++A+E +FP+  +K+ALV LE E++W +
Sbjct: 50  KRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKK 109

Query: 150 IVQVIKWMSSKGQGKTIRTYEQLVCALEKDNRADEACRIWEFKIAHDLQSVPWRFCRLML 209
           I+QV KWM SKGQG+T+ TY  L+ AL +DNR DEA  +W       L+  P +F   M+
Sbjct: 110 IIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMI 169

Query: 210 GIYYRNNKLDRLVKLFKNLEACGRKP 235
            IYY+ +   +L ++F ++E  G KP
Sbjct: 170 SIYYKRDMHQKLFEVFADMEELGVKP 195



>AT4G18975.1 | chr4:10392170-10393665 REVERSE LENGTH=288
          Length = 287

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 1/156 (0%)

Query: 93  SSAEKRKFLVNTLLDLEDSKEGVYSTLDAWVAFEQDFPVASIKQALVALEKEEQWHRIVQ 152
            S +K   LV  L  L + KE VY  L+ WVA+E +FP+ +  +AL  L K  QWHR++Q
Sbjct: 93  GSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQ 152

Query: 153 VIKWMSSKGQGKTIRTYEQLVCALEKDNRADEACRIWEFKIAHDLQSVPWRFCRLMLGIY 212
           + KWM SKGQG T+ TY+ L+ A + D RADEA  +W   +    +S+P R    M+ +Y
Sbjct: 153 LAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALY 212

Query: 213 YRNNKLDRLVKLFKNLEACGRKPPSKDIVRKVEDAY 248
             ++  D+++++F ++E   +  P +D  R+V  A+
Sbjct: 213 AHHDLHDKVIEVFADMEEL-KVSPDEDSARRVARAF 247



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,860,777
Number of extensions: 228487
Number of successful extensions: 892
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 896
Number of HSP's successfully gapped: 3
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)