BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0118200 Os12g0118200|AK066991
         (250 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0118200  Conserved hypothetical protein                      469   e-133
Os11g0118800  Similar to Expressed protein-like protein           450   e-127
Os05g0315200  Conserved hypothetical protein                      201   4e-52

>Os12g0118200 Conserved hypothetical protein
          Length = 250

 Score =  469 bits (1208), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/250 (92%), Positives = 232/250 (92%)

Query: 1   MAYRRKQGPIAADDRRXXXXXXXXXXXXXXXXXXIKSMNEPKLGLWETLARKAKGILDED 60
           MAYRRKQGPIAADDRR                  IKSMNEPKLGLWETLARKAKGILDED
Sbjct: 1   MAYRRKQGPIAADDRRSSYPQPPQGSSSSYSYTSIKSMNEPKLGLWETLARKAKGILDED 60

Query: 61  GTAHKSDEYTKQKTPRKFDSSTGAQESRSRWSFENHSRTGDTGSRTRSEALAASVNQLGG 120
           GTAHKSDEYTKQKTPRKFDSSTGAQESRSRWSFENHSRTGDTGSRTRSEALAASVNQLGG
Sbjct: 61  GTAHKSDEYTKQKTPRKFDSSTGAQESRSRWSFENHSRTGDTGSRTRSEALAASVNQLGG 120

Query: 121 RIRDALEEGLTIVDNKTSNIIEETKKIQIRRKQANSNSYMPNPAFDTLRPPNLSHDQAET 180
           RIRDALEEGLTIVDNKTSNIIEETKKIQIRRKQANSNSYMPNPAFDTLRPPNLSHDQAET
Sbjct: 121 RIRDALEEGLTIVDNKTSNIIEETKKIQIRRKQANSNSYMPNPAFDTLRPPNLSHDQAET 180

Query: 181 AAQETQLKASRDVANAMAAKAKLVLRELKTVKADLAFAKQRCAQLEEENKFLREAKQKGS 240
           AAQETQLKASRDVANAMAAKAKLVLRELKTVKADLAFAKQRCAQLEEENKFLREAKQKGS
Sbjct: 181 AAQETQLKASRDVANAMAAKAKLVLRELKTVKADLAFAKQRCAQLEEENKFLREAKQKGS 240

Query: 241 KTEEDDDLVC 250
           KTEEDDDLVC
Sbjct: 241 KTEEDDDLVC 250



>Os11g0118800 Similar to Expressed protein-like protein
          Length = 372

 Score =  450 bits (1158), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/249 (89%), Positives = 229/249 (91%)

Query: 1   MAYRRKQGPIAADDRRXXXXXXXXXXXXXXXXXXIKSMNEPKLGLWETLARKAKGILDED 60
           MAYRRKQGPIAADDRR                  IKSMNEPKLGLWETLARKAKGILDED
Sbjct: 1   MAYRRKQGPIAADDRRSSYPQSPQGSSSSYSYTSIKSMNEPKLGLWETLARKAKGILDED 60

Query: 61  GTAHKSDEYTKQKTPRKFDSSTGAQESRSRWSFENHSRTGDTGSRTRSEALAASVNQLGG 120
           G AHKSDEYTK+KTPRKFDSSTGAQES+SRWSFENHS+TGDTGSRTRSEALAASVNQLGG
Sbjct: 61  GVAHKSDEYTKEKTPRKFDSSTGAQESQSRWSFENHSKTGDTGSRTRSEALAASVNQLGG 120

Query: 121 RIRDALEEGLTIVDNKTSNIIEETKKIQIRRKQANSNSYMPNPAFDTLRPPNLSHDQAET 180
           RIRDALEEGLTIVDNKTSNIIEETKKIQIRRKQANSNSY+PN AFDTLRPPNLS+DQAET
Sbjct: 121 RIRDALEEGLTIVDNKTSNIIEETKKIQIRRKQANSNSYVPNLAFDTLRPPNLSNDQAET 180

Query: 181 AAQETQLKASRDVANAMAAKAKLVLRELKTVKADLAFAKQRCAQLEEENKFLREAKQKGS 240
           AAQETQLKASRDVANAMAAKAKLVLRELKTVKADLAFAKQRCAQLEEENKFLREAKQKGS
Sbjct: 181 AAQETQLKASRDVANAMAAKAKLVLRELKTVKADLAFAKQRCAQLEEENKFLREAKQKGS 240

Query: 241 KTEEDDDLV 249
           KTEEDDDL+
Sbjct: 241 KTEEDDDLI 249



>Os05g0315200 Conserved hypothetical protein
          Length = 419

 Score =  201 bits (511), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 116/215 (53%), Positives = 146/215 (67%), Gaps = 7/215 (3%)

Query: 35  IKSMNEPKLGLWETLARKAKGILDEDGTAHKSDEYTKQKTPRKFDSSTGAQESRSRWSFE 94
           +K++NE K G W  LARKAK  LDEDG+  + D   +Q+ P +     G Q +RS+    
Sbjct: 96  MKNLNEAKYGFWGALARKAKSFLDEDGSPGQYDSPARQQ-PSRDAPPVGVQYTRSQQPPS 154

Query: 95  NHSRTGDTGSRTRSEALAASVNQLGGRIRDALEEGLTIVDNKTSNIIEETKKIQIRRKQA 154
              ++    S  RSEA+A+S+N +GG I+ ALEEG TIV+NKT++II ET+K+ IRRK A
Sbjct: 155 ETWKSETPPSHKRSEAIASSLNYIGGTIKSALEEGRTIVENKTADIIHETRKLNIRRKGA 214

Query: 155 NSNSYMPNPAFDTLRPPNLSHDQAETAAQETQLKASRDVANAMAAKAKLVLRELKTVKAD 214
            S +    P   T R  NL  +  +    ETQLKASRDVANAMAAKAKL+LRELKTVKAD
Sbjct: 215 GSTTQGEAPQRFTQR--NLPQNPLD---YETQLKASRDVANAMAAKAKLLLRELKTVKAD 269

Query: 215 LAFAKQRCAQLEEENKFLREAKQKGSKTEEDDDLV 249
           LAFAK+RCAQLE+ENK LRE+  KG    EDDDL+
Sbjct: 270 LAFAKERCAQLEDENKILRESHDKGDNP-EDDDLI 303



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.124    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,468,976
Number of extensions: 273462
Number of successful extensions: 1029
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1025
Number of HSP's successfully gapped: 4
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 155 (64.3 bits)