Os05g0315200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0315200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15 | 0.182 | 11.8 | 0.103 | 0.36 | -0.442 | 0.0559 | 0.479 | 0.14 | 22.2 | 77.8 | 1154 | -- | -- |
| 15.25 | 0.182 | 11.8 | 0.073 | 0.357 | -0.431 | 0.0847 | -- | 0.13 | 22.1 | 78 | 1145 | -- | -- |
| 15.01 | 0.18 | 11.8 | 0.103 | 0.361 | -0.442 | -- | 0.509 | 0.14 | 22.1 | 77.71 | 1152 | -- | -- |
| 15.3 | 0.182 | 11.8 | 0.0597 | 0.36 | -0.416 | -- | -- | 0.132 | 22.1 | 77.91 | 1149 | -- | -- |
| 19.77 | 0.207 | 11.8 | 0.141 | -- | -0.374 | -- | 0.511 | 0.158 | -- | 76 | 1456 | -- | -- |
| 17.72 | 0.197 | 11.8 | 0.0293 | 0.284 | -- | 0.0851 | -- | 0.11 | 21.6 | -- | -- | -- | -- |
| 17.74 | 0.197 | 11.8 | 0.0263 | 0.284 | -- | -- | -- | 0.11 | 21.5 | -- | -- | -- | -- |
| 19.98 | 0.208 | 11.8 | 0.0679 | -- | -0.348 | -- | -- | 0.14 | -- | 75.74 | 1479 | -- | -- |
| 15.3 | 0.182 | 11.8 | -- | 0.338 | -0.385 | -- | -- | 0.136 | 22 | 75.83 | 1189 | -- | -- |
| 22.48 | 0.222 | 11.8 | 0.0283 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 17.76 | 0.197 | 11.8 | -- | 0.284 | -- | -- | -- | 0.107 | 21.5 | -- | -- | -- | -- |
| 20.1 | 0.209 | 11.8 | -- | -- | -0.338 | -- | -- | 0.132 | -- | 75.88 | 1480 | -- | -- |
| 22.5 | 0.221 | 11.8 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.54 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 2 | 14.61 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 3 | 14.67 | humidity | 90 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 4 | 14.74 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 5 | 14.76 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 7 | 14.79 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 14 | 14.84 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 19 | 14.85 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 21 | 14.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 26 | 14.87 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 27 | 14.88 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 40 | 14.89 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 42 | 14.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 50 | 14.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 125 | 14.93 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 146 | 14.94 | radiation | 1 | 1440 | > th | dose independent | sin | 17 | NA |
| 148 | 14.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 173 | 14.95 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 174 | 14.95 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 202 | 14.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 205 | 14.96 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 334 | 15.02 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 365 | 15.03 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 455 | 15.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 457 | 15.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 483 | 15.06 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 547 | 15.10 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 548 | 15.10 | humidity | 90 | 720 | > th | dose dependent | sin | 18 | NA |
| 643 | 15.14 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 660 | 15.15 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 662 | 15.15 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 697 | 15.16 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 710 | 15.17 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 4 |
| 737 | 15.18 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 797 | 15.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 812 | 15.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 815 | 15.21 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 16 |
| 859 | 15.23 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 14 |
| 876 | 15.23 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 898 | 15.24 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 908 | 15.24 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 951 | 15.26 | humidity | 90 | 720 | > th | dose independent | rect. | 17 | 8 |
| 989 | 15.27 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 10 |