Os12g0118200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0118200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.82 | 0.372 | 11 | -2.14 | 0.823 | -1.03 | 0.638 | 1.06 | 0.242 | 2.6 | 23.54 | 1968 | -- | -- |
| 66.77 | 0.381 | 10.9 | -1.85 | 0.821 | -1.08 | 0.751 | -- | 0.37 | 2.35 | 22.5 | 3240 | -- | -- |
| 64.25 | 0.373 | 11 | -2.15 | 0.821 | -1.03 | -- | 1.05 | 0.241 | 2.62 | 23.55 | 1983 | -- | -- |
| 66.16 | 0.379 | 10.9 | -1.76 | 0.811 | -0.991 | -- | -- | 0.357 | 2.61 | 23.56 | 2020 | -- | -- |
| 94.48 | 0.453 | 11 | -2.1 | -- | -1.32 | -- | 1.42 | 0.25 | -- | 25 | 1106 | -- | -- |
| 105.24 | 0.481 | 10.8 | -1.32 | 0.863 | -- | 0.623 | -- | 0.793 | 2.25 | -- | -- | -- | -- |
| 106.68 | 0.484 | 10.8 | -1.34 | 0.864 | -- | -- | -- | 0.789 | 2.23 | -- | -- | -- | -- |
| 96.37 | 0.457 | 10.9 | -1.81 | -- | -1.2 | -- | -- | 0.354 | -- | 24.1 | 2479 | -- | -- |
| 138.07 | 0.547 | 10.9 | -- | 0.829 | -0.586 | -- | -- | 0.732 | 2.31 | 22.89 | 1861 | -- | -- |
| 151.14 | 0.574 | 10.8 | -1.3 | -- | -- | -- | -- | 0.81 | -- | -- | -- | -- | -- |
| 154 | 0.581 | 10.8 | -- | 0.839 | -- | -- | -- | 0.938 | 2.2 | -- | -- | -- | -- |
| 168.52 | 0.605 | 10.8 | -- | -- | -0.863 | -- | -- | 0.721 | -- | 24.9 | 1087 | -- | -- |
| 195.97 | 0.653 | 10.8 | -- | -- | -- | -- | -- | 0.955 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 2 | 62.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 7 | 62.39 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 12 | 62.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 23 | 63.30 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 30 | 63.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 33 | 64.16 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 34 | 64.19 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 35 | 64.19 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 36 | 64.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 43 | 64.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 46 | 64.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 54 | 64.35 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 60 | 64.42 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 13 |
| 65 | 64.43 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 75 | 64.51 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 97 | 64.69 | humidity | 60 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 101 | 64.75 | humidity | 70 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 128 | 64.93 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 147 | 65.00 | humidity | 60 | 43200 | < th | dose dependent | sin | 7 | NA |
| 254 | 65.59 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 258 | 65.60 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 282 | 65.69 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 337 | 65.88 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 359 | 65.94 | temperature | 25 | 4320 | < th | dose dependent | sin | 11 | NA |
| 361 | 65.94 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 3 |
| 383 | 65.99 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 413 | 66.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 428 | 66.10 | radiation | 1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 454 | 66.17 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 12 |
| 493 | 66.23 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 12 |
| 525 | 66.28 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 8 |
| 547 | 66.31 | wind | 5 | 43200 | > th | dose dependent | sin | 20 | NA |
| 566 | 66.33 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 7 |
| 588 | 66.35 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 20 |
| 599 | 66.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 609 | 66.38 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 17 |
| 622 | 66.40 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 651 | 66.43 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 662 | 66.45 | wind | 7 | 43200 | > th | dose independent | sin | 23 | NA |
| 663 | 66.45 | wind | 7 | 43200 | < th | dose independent | sin | 23 | NA |
| 696 | 66.50 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 707 | 66.51 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 770 | 66.59 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 832 | 66.64 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 851 | 66.65 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 875 | 66.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 11 |