BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0115700 Os12g0115700|AK099443
         (212 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0115700  Chalcone-flavanone isomerase family protein         399   e-112
Os11g0116300  Chalcone-flavanone isomerase family protein         388   e-108
Os03g0819600  Chalcone isomerase (EC 5.5.1.6)                      84   9e-17

>Os12g0115700 Chalcone-flavanone isomerase family protein
          Length = 212

 Score =  399 bits (1026), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/212 (93%), Positives = 199/212 (93%)

Query: 1   MGTEMATVEVEGIPFPQEITVSKPLSLLAHGITDIEIHFLQIKYNAIGVYLEKDNVLGHL 60
           MGTEMATVEVEGIPFPQEITVSKPLSLLAHGITDIEIHFLQIKYNAIGVYLEKDNVLGHL
Sbjct: 1   MGTEMATVEVEGIPFPQEITVSKPLSLLAHGITDIEIHFLQIKYNAIGVYLEKDNVLGHL 60

Query: 61  ESWKGKKAEELVQDDGFFQALVSAPVEKLFRIVVIKEIKGSQYGVQLESSVRDRLVSVDK 120
           ESWKGKKAEELVQDDGFFQALVSAPVEKLFRIVVIKEIKGSQYGVQLESSVRDRLVSVDK
Sbjct: 61  ESWKGKKAEELVQDDGFFQALVSAPVEKLFRIVVIKEIKGSQYGVQLESSVRDRLVSVDK 120

Query: 121 YXXXXXXXXXXXXXFFQSKYFKPNSVLTFHFPNTPGIAEISFVTEGKGEAKLTVENKNVA 180
           Y             FFQSKYFKPNSVLTFHFPNTPGIAEISFVTEGKGEAKLTVENKNVA
Sbjct: 121 YEDEEEESLEKVTEFFQSKYFKPNSVLTFHFPNTPGIAEISFVTEGKGEAKLTVENKNVA 180

Query: 181 EMIQKWYLGGESAVSPTTVKSLADQFAALLSA 212
           EMIQKWYLGGESAVSPTTVKSLADQFAALLSA
Sbjct: 181 EMIQKWYLGGESAVSPTTVKSLADQFAALLSA 212



>Os11g0116300 Chalcone-flavanone isomerase family protein
          Length = 212

 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/212 (91%), Positives = 196/212 (92%)

Query: 1   MGTEMATVEVEGIPFPQEITVSKPLSLLAHGITDIEIHFLQIKYNAIGVYLEKDNVLGHL 60
           MGTE+ATVEVEGIPFPQEITVSKPLSLLA+GITDIEIHFLQIKYNAIGVYLEKDNVL HL
Sbjct: 1   MGTEIATVEVEGIPFPQEITVSKPLSLLANGITDIEIHFLQIKYNAIGVYLEKDNVLAHL 60

Query: 61  ESWKGKKAEELVQDDGFFQALVSAPVEKLFRIVVIKEIKGSQYGVQLESSVRDRLVSVDK 120
           ESWKGKKAEELVQDDGFFQALVSAPVEKL RIVVIKEIKGSQYGVQLESSVRDRLVSVDK
Sbjct: 61  ESWKGKKAEELVQDDGFFQALVSAPVEKLLRIVVIKEIKGSQYGVQLESSVRDRLVSVDK 120

Query: 121 YXXXXXXXXXXXXXFFQSKYFKPNSVLTFHFPNTPGIAEISFVTEGKGEAKLTVENKNVA 180
           Y             FFQSKYFKPNSV+TFHFP TPGIAEISFVTEGKGEAKLTVENKNVA
Sbjct: 121 YEEDEEEALEKVTEFFQSKYFKPNSVITFHFPTTPGIAEISFVTEGKGEAKLTVENKNVA 180

Query: 181 EMIQKWYLGGESAVSPTTVKSLADQFAALLSA 212
           EMIQKWYLGGESAVSPTTVKSLADQFAALLSA
Sbjct: 181 EMIQKWYLGGESAVSPTTVKSLADQFAALLSA 212



>Os03g0819600 Chalcone isomerase (EC 5.5.1.6)
          Length = 233

 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 18/217 (8%)

Query: 8   VEVEGIPFPQEITVSKPLSLLAH-----GITDIEIHFLQIKYNAIGVYLEKDNVLGHL-E 61
           VEV+G+ FP       P S  AH     G+  +EI    IK+ AIGVYLE+   +  L +
Sbjct: 7   VEVDGVVFPP--VARPPGSGHAHFLAGAGVRGVEIAGNFIKFTAIGVYLEEGAAVPALAK 64

Query: 62  SWKGKKAEELVQDDGFFQALVSAPVEKLFRIVVIKEIKGSQYGVQLESSVRDRLVSVDKY 121
            W GK A+EL  D  FF+ +V+   EK  R+ +I  + G QY  ++  +      +   Y
Sbjct: 65  KWAGKSADELAADAAFFRDVVTGDFEKFTRVTMILPLTGEQYSDKVTENCVAAWKAAGVY 124

Query: 122 XXXXXXXXXXXXXFFQSKYFKPNSVLTF-HFPNTPGIAEISF-----VTEGKGEAKLTVE 175
                         F+   F P + + F H P  PG+  ++F     V EG   A   +E
Sbjct: 125 TDAEGAAADKFKEAFKPHSFPPGASILFTHSP--PGVLTVAFSKDSSVPEG-AVAAAAIE 181

Query: 176 NKNVAEMIQKWYLGGESAVSPTTVKSLADQFAALLSA 212
           N+ + E +    + GE  VSP   +S+A + + LL A
Sbjct: 182 NRALCEAVLDSII-GEHGVSPAAKRSIAARVSQLLKA 217



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,983,665
Number of extensions: 205468
Number of successful extensions: 426
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 3
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)