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Os03g0819600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Chalcone isomerase (EC 5.5.1.6).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.049) R2 : 0.677
β1 : -2.34 (0.181) R2dD : 0.127 R2D : 0.137
β2 : 3.4 (0.165) R2dC : 0.537 R2C : -0.353
β3 : -6.7 (0.261) R2dE : 0.834 R2E : -0.00922
β4 : 3.67 (0.627) R2dD*C : 0.0341 R2D*C : -0.0215
β5 : -5.27 (0.957) R2dD*E : 0.0311 R2D*E : 0.0377
γ1 : -0.225 (0.104) R2dN8 : 0.00444 R2N8 : -0.00718
σ : 0.921
deviance : 384.17
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C
peak time of C : 8.03
E
wheather : humidity
threshold : 47.27
memory length : 894
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 9.13
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
384.17 0.921 12.7 -2.34 3.4 -6.7 3.67 -5.27 -0.225 8.03 47.27 894 9.13 --
405.83 0.938 12.7 -2.47 3.02 -5.93 2.06 -- -0.25 9.11 51.81 958 9.39 --
408.7 0.942 12.7 -2.33 2.66 -6.2 -- -3.39 -0.225 7.79 46.86 889 9.92 --
419.16 0.954 12.7 -2.48 2.73 -6.13 -- -- -0.244 8.37 48.17 929 9.84 --
474.38 1.01 12.7 -2.09 -- -4.81 -- -3.91 -0.323 -- 37.98 2050 10.6 --
675.29 1.22 12.7 -2.51 2.3 -- 1.99 -- -0.229 13.3 -- -- -- --
691.36 1.23 12.7 -2.44 2.31 -- -- -- -0.217 13.4 -- -- -- --
442.35 0.98 12.7 -2.77 -- -5.29 -- -- -0.32 -- 23.28 1048 13.7 --
569.54 1.11 12.6 -- 3.36 -6.17 -- -- -0.0525 9.14 58.08 908 8.89 --
1018.61 1.49 12.8 -2.53 -- -- -- -- -0.266 -- -- -- -- --
848.66 1.36 12.7 -- 2.35 -- -- -- 0.055 13.4 -- -- -- --
631.66 1.17 12.7 -- -- -4.97 -- -- -0.0666 -- 44.41 1940 9.77 --
1187.98 1.61 12.7 -- -- -- -- -- 0.0154 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 379.77 humidity 70 720 > th dose dependent rect. 18 3
2 388.52 humidity 50 720 > th dose dependent rect. 17 9
15 396.01 humidity 90 720 < th dose dependent rect. 18 5
71 410.70 humidity 80 720 > th dose independent rect. 16 6
78 412.16 humidity 60 720 > th dose dependent sin 15 NA
126 420.67 humidity 90 720 < th dose dependent rect. 17 15
131 422.14 humidity 90 720 < th dose dependent sin 13 NA
179 428.26 humidity 80 720 < th dose independent rect. 16 6
219 433.13 humidity 80 720 < th dose independent rect. 18 3
228 434.05 humidity 90 1440 < th dose dependent rect. 14 22
230 434.23 humidity 80 1440 > th dose independent rect. 6 16
268 436.27 humidity 90 1440 < th dose dependent rect. 11 23
277 436.69 humidity 90 1440 < th dose dependent rect. 2 22
305 437.39 humidity 90 1440 < th dose dependent no NA NA
308 437.49 humidity 90 1440 < th dose dependent rect. 5 23
309 437.54 humidity 50 1440 > th dose dependent rect. 4 20
311 437.55 humidity 80 1440 < th dose independent rect. 6 15
335 438.00 humidity 90 1440 < th dose dependent rect. 22 23
391 438.98 humidity 50 1440 > th dose dependent rect. 13 23
429 439.59 humidity 50 1440 > th dose dependent rect. 11 23
442 439.85 humidity 50 1440 > th dose dependent no NA NA
453 439.96 humidity 50 1440 > th dose dependent rect. 15 23
584 442.35 humidity 80 720 > th dose independent rect. 12 10
638 443.23 humidity 80 720 > th dose dependent rect. 9 15
662 443.59 humidity 90 1440 < th dose dependent sin 17 NA
741 444.73 humidity 80 720 > th dose independent sin 17 NA
802 445.65 humidity 70 1440 > th dose independent rect. 9 18
809 445.69 humidity 70 1440 > th dose independent rect. 9 16
815 445.72 humidity 70 1440 > th dose independent rect. 9 11
819 445.73 humidity 70 1440 > th dose independent rect. 9 22
824 445.80 humidity 70 1440 > th dose independent rect. 14 22
859 446.36 humidity 70 1440 > th dose independent rect. 11 23
976 447.79 humidity 80 1440 < th dose independent sin 0 NA
978 447.81 humidity 80 1440 > th dose independent sin 0 NA