Os12g0115700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Chalcone-flavanone isomerase family protein.
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Os12g0115700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Chalcone-flavanone isomerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 948.01 | 1.45 | 9.16 | -5.99 | 3.17 | -3.79 | 3.79 | -1.07 | -1.54 | 9.27 | 71.62 | 1232 | -- | -- |
| 949.12 | 1.43 | 9.17 | -6.12 | 3.19 | -3.9 | 3.58 | -- | -1.53 | 9.26 | 73 | 1230 | -- | -- |
| 994.55 | 1.47 | 9.15 | -5.95 | 3.17 | -3.82 | -- | -0.223 | -1.49 | 9.2 | 72.08 | 1233 | -- | -- |
| 994.61 | 1.47 | 9.16 | -5.98 | 3.16 | -3.84 | -- | -- | -1.52 | 9.22 | 72.71 | 1233 | -- | -- |
| 1436.73 | 1.77 | 9.21 | -5.68 | -- | -3.51 | -- | -0.68 | -1.4 | -- | 72 | 1428 | -- | -- |
| 1463.14 | 1.79 | 9.06 | -5.33 | 2.76 | -- | 3.13 | -- | -1.03 | 8.27 | -- | -- | -- | -- |
| 1493.35 | 1.81 | 9.07 | -5.24 | 2.76 | -- | -- | -- | -1.03 | 8.19 | -- | -- | -- | -- |
| 1438.45 | 1.77 | 9.24 | -5.9 | -- | -3.55 | -- | -- | -1.47 | -- | 72.41 | 1428 | -- | -- |
| 1896.9 | 2.03 | 9.01 | -- | 2.97 | -3.25 | -- | -- | -0.807 | 9.11 | 75 | 1269 | -- | -- |
| 1912.82 | 2.04 | 9.14 | -5.22 | -- | -- | -- | -- | -1 | -- | -- | -- | -- | -- |
| 2218.21 | 2.2 | 8.93 | -- | 2.73 | -- | -- | -- | -0.45 | 8.33 | -- | -- | -- | -- |
| 2316.18 | 2.24 | 9.09 | -- | -- | -3.06 | -- | -- | -0.777 | -- | 74.75 | 1420 | -- | -- |
| 2632.39 | 2.39 | 9.01 | -- | -- | -- | -- | -- | -0.423 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 996.71 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 12 | 1008.68 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 34 | 1010.93 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 49 | 1012.03 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 100 | 1016.36 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 111 | 1016.63 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 138 | 1016.79 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 159 | 1017.00 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 161 | 1017.10 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 164 | 1017.24 | humidity | 50 | 1440 | > th | dose dependent | sin | 23 | NA |
| 209 | 1019.13 | humidity | 90 | 1440 | < th | dose dependent | sin | 0 | NA |
| 213 | 1019.32 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 317 | 1023.46 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 329 | 1024.01 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 340 | 1025.00 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 350 | 1025.37 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 395 | 1027.49 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 453 | 1029.26 | humidity | 70 | 1440 | > th | dose independent | sin | 10 | NA |
| 459 | 1029.47 | humidity | 70 | 1440 | < th | dose independent | sin | 11 | NA |
| 518 | 1031.52 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 521 | 1031.58 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 17 |
| 523 | 1031.59 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 524 | 1031.60 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 538 | 1032.08 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 543 | 1032.13 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 21 |
| 547 | 1032.16 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 559 | 1032.20 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 564 | 1032.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 19 |
| 572 | 1032.25 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 667 | 1034.15 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 712 | 1036.04 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 714 | 1036.08 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 734 | 1037.30 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 755 | 1038.15 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 802 | 1039.61 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 827 | 1040.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 838 | 1040.71 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 908 | 1042.93 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 909 | 1042.97 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 940 | 1043.39 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 946 | 1043.47 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 965 | 1044.30 | humidity | 70 | 1440 | > th | dose independent | sin | 19 | NA |