BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0115700 Os12g0115700|AK099443
         (212 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05270.1  | chr5:1563492-1564827 FORWARD LENGTH=210            244   3e-65
AT1G53520.1  | chr1:19976485-19977915 REVERSE LENGTH=288           71   4e-13
AT3G55120.1  | chr3:20430248-20431415 REVERSE LENGTH=247           64   5e-11
AT5G66220.1  | chr5:26461422-26462174 FORWARD LENGTH=175           64   5e-11

>AT5G05270.1 | chr5:1563492-1564827 FORWARD LENGTH=210
          Length = 209

 Score =  244 bits (623), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/211 (59%), Positives = 150/211 (71%), Gaps = 2/211 (0%)

Query: 1   MGTEMATVEVEGIPFPQEITVSKPLSLLAHGITDIEIHFLQIKYNAIGVYLEKDNVLGHL 60
           MGTEM  V V  +PFP +I  SKPLSLL  GITDIEIHFLQ+K+ AIGVYL+  +V  HL
Sbjct: 1   MGTEM--VMVHEVPFPPQIITSKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHL 58

Query: 61  ESWKGKKAEELVQDDGFFQALVSAPVEKLFRIVVIKEIKGSQYGVQLESSVRDRLVSVDK 120
           ++WKGK  +EL  DD FF AL SA +EK+ R+VVIKEIKG+QYGVQLE++VRDRL   DK
Sbjct: 59  DNWKGKTGKELAGDDDFFDALASAEMEKVIRVVVIKEIKGAQYGVQLENTVRDRLAEEDK 118

Query: 121 YXXXXXXXXXXXXXFFQSKYFKPNSVLTFHFPNTPGIAEISFVTEGKGEAKLTVENKNVA 180
           Y             FFQSKYFK NSV+T+HF    GI EI F TEGK E KL VEN NV 
Sbjct: 119 YEEEEETELEKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGKEEEKLKVENANVV 178

Query: 181 EMIQKWYLGGESAVSPTTVKSLADQFAALLS 211
            M+Q+WYL G   VSP+T+ S+AD  +A+L+
Sbjct: 179 GMMQRWYLSGSRGVSPSTIVSIADSISAVLT 209



>AT1G53520.1 | chr1:19976485-19977915 REVERSE LENGTH=288
          Length = 287

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 10/202 (4%)

Query: 13  IPFPQEIT---VSKPLSLLAHGITDIEIHFLQIKYNAIGVYLEKDNVLGHLESWKGKKAE 69
           + F + +T    S PLSLL  G  + +   + +K  A G Y+  +++L  L +W G+ A+
Sbjct: 91  VKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVN-ESILSGLSAWTGRSAD 149

Query: 70  ELVQDDGFFQALVSAPVEKLFRIVVIKEIKGSQYGVQLESSVRDRLVSVDKYXXXXXXXX 129
           E+ +D   F ++  A  EK  +IV+++++ G  +   L+ ++  R+ S            
Sbjct: 150 EIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGKTFWDALDEAISPRIKSPSS---EDTTAL 206

Query: 130 XXXXXFFQSKYFKPNSVLTFHFPNTPGIAEISFVTEG-KGEAKLTVENKNVAEMIQKWYL 188
                 FQ++     SV+   + NT  +  +S  + G       T+E+ NV   +   + 
Sbjct: 207 STFRGIFQNRPLNKGSVILLTWINTSNML-VSVSSGGLPTNVDATIESGNVTSALFDVFF 265

Query: 189 GGESAVSPTTVKSLADQFAALL 210
            G+S VSPT   S+A+Q A  L
Sbjct: 266 -GDSPVSPTLKSSVANQLAMTL 286



>AT3G55120.1 | chr3:20430248-20431415 REVERSE LENGTH=247
          Length = 246

 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 4/200 (2%)

Query: 13  IPFPQEITVSKPLSLLAHGITDIEIHFLQIKYNAIGVYLEKDNVLGHLESWKGKKAEELV 72
           +P  +    S PL L   G+  ++I    + +  IGVYLE + V      WKGK  EEL 
Sbjct: 27  VPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTVIGVYLEGNAVPSLSVKWKGKTTEELT 86

Query: 73  QDDGFFQALVSAPVEKLFRIVVIKEIKGSQYGVQLESSVRDRLVSVDKYXXXXXXXXXXX 132
           +   FF+ +V+   EK  ++ +   + G QY  ++  +       +  Y           
Sbjct: 87  ESIPFFREIVTGAFEKFIKVTMKLPLTGQQYSEKVTENCVAIWKQLGLYTDCEAKAVEKF 146

Query: 133 XXFFQSKYFKPNSVLTFHFPNTPGIAEISFVTEGK-GEAKLTV-ENKNVAEMIQKWYLGG 190
              F+ + F P S + F    T G   ++F  +    E  + V ENK +AE + +  + G
Sbjct: 147 LEIFKEETFPPGSSILFALSPT-GSLTVAFSKDDSIPETGIAVIENKLLAEAVLESII-G 204

Query: 191 ESAVSPTTVKSLADQFAALL 210
           ++ VSP T  S+A++ + L+
Sbjct: 205 KNGVSPGTRLSVAERLSQLM 224



>AT5G66220.1 | chr5:26461422-26462174 FORWARD LENGTH=175
          Length = 174

 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 63  WKGKKAEELVQDDGFFQALVSAPVEKLFRIVVIKEIKGSQYGVQLESSVRDRLVSVDKYX 122
           WKGK A+EL +   FF+ LV+   EKL R+ + K + G QY  ++  +  + + +  KY 
Sbjct: 10  WKGKNAKELTESVPFFRQLVTGEFEKLARVTMKKRLTGIQYSEKVVENCEEIMKASGKYT 69

Query: 123 XXXXXXXXXXXXFFQSKYFKPNSVLTFHFPNTP-GIAEISFVTEGK--GEAKLTVENKNV 179
                        F+++ F P S + F     P G   I+F  E +     K  ++NK +
Sbjct: 70  RSEAKAIDQFLMVFKNQDFPPGSSIIFAI--CPKGSLTIAFSKEERVPKTGKAVIKNKLL 127

Query: 180 AEMIQKWYLGGESAVSPTTVKSLADQFAALLS 211
            E + +  + G++ VSP T KSLA++ + L++
Sbjct: 128 GEAVLESMI-GKNGVSPATRKSLAERLSKLMN 158



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,990,281
Number of extensions: 145448
Number of successful extensions: 369
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 4
Length of query: 212
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 118
Effective length of database: 8,529,465
Effective search space: 1006476870
Effective search space used: 1006476870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)