BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0111900 Os12g0111900|013-082-C04
         (133 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0111900  GCN5-like 1 family protein                          233   2e-62
Os11g0112300  Similar to GCN5-like protein 1 (RT14 protein h...   213   4e-56
Os12g0416500  GCN5-like 1 family protein                          141   1e-34

>Os12g0111900 GCN5-like 1 family protein
          Length = 133

 Score =  233 bits (595), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 20  IMQRHHHHSLHQRKITDREKIDAVRSAARVADLLVATVDGGAQELYINERRIEIEARALL 79
           IMQRHHHHSLHQRKITDREKIDAVRSAARVADLLVATVDGGAQELYINERRIEIEARALL
Sbjct: 20  IMQRHHHHSLHQRKITDREKIDAVRSAARVADLLVATVDGGAQELYINERRIEIEARALL 79

Query: 80  ATIARYKKQTDQWLAATNAINSVLKEIGDYENWMKIMDFDCKSINAAIRNIHHS 133
           ATIARYKKQTDQWLAATNAINSVLKEIGDYENWMKIMDFDCKSINAAIRNIHHS
Sbjct: 80  ATIARYKKQTDQWLAATNAINSVLKEIGDYENWMKIMDFDCKSINAAIRNIHHS 133



>Os11g0112300 Similar to GCN5-like protein 1 (RT14 protein homolog)
          Length = 136

 Score =  213 bits (541), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 107/114 (93%)

Query: 20  IMQRHHHHSLHQRKITDREKIDAVRSAARVADLLVATVDGGAQELYINERRIEIEARALL 79
           IMQRHHH SLHQR  T+R K+DAV+SAARVADLLVATVDGG QELYINERRIE EARALL
Sbjct: 23  IMQRHHHQSLHQRNKTERVKVDAVKSAARVADLLVATVDGGVQELYINERRIEFEARALL 82

Query: 80  ATIARYKKQTDQWLAATNAINSVLKEIGDYENWMKIMDFDCKSINAAIRNIHHS 133
           ATIAR+KKQTDQWLAATNAINSVLKEIGD+ENWMKIMDFDCKSINAAIRNIH S
Sbjct: 83  ATIARFKKQTDQWLAATNAINSVLKEIGDFENWMKIMDFDCKSINAAIRNIHQS 136



>Os12g0416500 GCN5-like 1 family protein
          Length = 102

 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 76/83 (91%)

Query: 20  IMQRHHHHSLHQRKITDREKIDAVRSAARVADLLVATVDGGAQELYINERRIEIEARALL 79
           IMQRHHH SL QRK T+R K+DAVRSAARVADLLVATVDGG QELYINE+RIE+EARALL
Sbjct: 14  IMQRHHHESLRQRKQTERAKMDAVRSAARVADLLVATVDGGVQELYINEKRIELEARALL 73

Query: 80  ATIARYKKQTDQWLAATNAINSV 102
           ATIA Y+KQTDQWLAATNAIN +
Sbjct: 74  ATIAWYRKQTDQWLAATNAINCL 96



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,390,364
Number of extensions: 101555
Number of successful extensions: 432
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 3
Length of query: 133
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 43
Effective length of database: 12,336,541
Effective search space: 530471263
Effective search space used: 530471263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 150 (62.4 bits)