Os12g0416500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GCN5-like 1 family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0416500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : GCN5-like 1 family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.74 | 0.341 | 9.51 | -0.431 | 0.425 | -0.803 | 0.136 | -0.641 | 0.0373 | 0.189 | 25.43 | 308 | -- | -- |
| 53.28 | 0.34 | 9.52 | -0.519 | 0.419 | -0.714 | 0.0657 | -- | 0.0285 | 23.9 | 25.85 | 319 | -- | -- |
| 52.8 | 0.338 | 9.52 | -0.439 | 0.424 | -0.791 | -- | -0.596 | 0.0376 | 0.0208 | 25.4 | 310 | -- | -- |
| 53.24 | 0.34 | 9.53 | -0.544 | 0.422 | -0.745 | -- | -- | 0.0114 | 0.135 | 25.9 | 312 | -- | -- |
| 58.62 | 0.357 | 9.52 | -0.539 | -- | -0.891 | -- | -0.407 | -0.00569 | -- | 26.71 | 771 | -- | -- |
| 61.26 | 0.367 | 9.49 | -0.354 | 0.397 | -- | -0.143 | -- | 0.173 | 22.8 | -- | -- | -- | -- |
| 61.33 | 0.367 | 9.49 | -0.348 | 0.397 | -- | -- | -- | 0.173 | 22.9 | -- | -- | -- | -- |
| 59.05 | 0.358 | 9.53 | -0.583 | -- | -0.849 | -- | -- | -0.0148 | -- | 26.93 | 754 | -- | -- |
| 60.14 | 0.361 | 9.5 | -- | 0.41 | -0.541 | -- | -- | 0.114 | 23.8 | 25.87 | 310 | -- | -- |
| 71.14 | 0.394 | 9.48 | -0.34 | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
| 64.53 | 0.376 | 9.48 | -- | 0.395 | -- | -- | -- | 0.212 | 22.8 | -- | -- | -- | -- |
| 66.98 | 0.381 | 9.5 | -- | -- | -0.617 | -- | -- | 0.0964 | -- | 26.9 | 730 | -- | -- |
| 74.19 | 0.402 | 9.47 | -- | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 18 |
| 4 | 51.51 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 2 |
| 6 | 51.60 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 17 |
| 8 | 51.62 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 15 | 51.89 | temperature | 25 | 270 | < th | dose dependent | sin | 22 | NA |
| 18 | 51.94 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 19 | 51.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 16 |
| 30 | 52.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 20 | 21 |
| 31 | 52.06 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 34 | 52.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 15 |
| 61 | 52.25 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 69 | 52.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 75 | 52.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 84 | 52.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 125 | 52.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 128 | 52.53 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 134 | 52.57 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 148 | 52.63 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 149 | 52.63 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 175 | 52.67 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 6 |
| 200 | 52.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 255 | 52.86 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 267 | 52.90 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 283 | 52.92 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 293 | 52.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 305 | 52.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 321 | 53.02 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 15 |
| 360 | 53.08 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 416 | 53.18 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 433 | 53.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 13 |
| 448 | 53.23 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 478 | 53.27 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 6 |
| 479 | 53.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 515 | 53.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 526 | 53.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 11 |
| 545 | 53.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 567 | 53.37 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 17 |
| 591 | 53.39 | temperature | 25 | 270 | < th | dose independent | sin | 22 | NA |
| 607 | 53.41 | temperature | 10 | 10 | > th | dose dependent | sin | 7 | NA |
| 635 | 53.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 709 | 53.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 752 | 53.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 2 |
| 764 | 53.51 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 814 | 53.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 940 | 53.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 8 |