BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0416500 Os12g0416500|AK067455
         (102 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30330.1  | chr2:12929045-12929688 REVERSE LENGTH=153           92   6e-20

>AT2G30330.1 | chr2:12929045-12929688 REVERSE LENGTH=153
          Length = 152

 Score = 92.0 bits (227), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 62/82 (75%)

Query: 13  QIMQRHHHESLRQRKQTERAKMDAVRSAARVADLLVATVDGGVQELYINEKRIELEARAL 72
           Q++  +   SL+ R++TER++ +A+R AAR ADLLV  V+GGV+E ++NEKRIE E R L
Sbjct: 36  QLIDDNRRSSLQLREKTERSRKEAIRHAARTADLLVKAVNGGVEECFVNEKRIESEIRNL 95

Query: 73  LATIAWYRKQTDQWLAATNAIN 94
             T+A + KQTDQWLA T+A+N
Sbjct: 96  AITVAKFGKQTDQWLAVTHAVN 117



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,797,879
Number of extensions: 48406
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 11,106,569
Length adjustment: 72
Effective length of query: 30
Effective length of database: 9,132,617
Effective search space: 273978510
Effective search space used: 273978510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)