Os12g0111900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GCN5-like 1 family protein.
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Os12g0111900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GCN5-like 1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 522.8 | 1.07 | 3.69 | 0.225 | 0.297 | -6 | 0.155 | -12.5 | -0.35 | 17.7 | 9 | 29 | -- | -- |
| 540.93 | 1.08 | 3.7 | 0.33 | 0.277 | -4.74 | 0.507 | -- | -0.384 | 17.9 | 8.906 | 27 | -- | -- |
| 522.85 | 1.06 | 3.69 | 0.223 | 0.298 | -5.98 | -- | -12.5 | -0.351 | 17.7 | 9 | 28 | -- | -- |
| 530.02 | 1.07 | 3.65 | 0.0247 | 0.331 | -2.9 | -- | -- | -0.334 | 18 | 8.946 | 25 | -- | -- |
| 527.4 | 1.07 | 3.68 | 0.224 | -- | -6.18 | -- | -12.7 | -0.354 | -- | 8.98 | 28 | -- | -- |
| 546.11 | 1.1 | 3.66 | -0.00541 | 0.372 | -- | -0.0903 | -- | -0.4 | 17.2 | -- | -- | -- | -- |
| 546.13 | 1.09 | 3.66 | -0.00537 | 0.371 | -- | -- | -- | -0.401 | 17.2 | -- | -- | -- | -- |
| 533.8 | 1.08 | 3.64 | 0.152 | -- | -2.8 | -- | -- | -0.346 | -- | 8.929 | 27 | -- | -- |
| 529.74 | 1.07 | 3.65 | -- | 0.307 | -2.55 | -- | -- | -0.351 | 17.6 | 8.938 | 28 | -- | -- |
| 553.34 | 1.1 | 3.65 | -0.0185 | -- | -- | -- | -- | -0.41 | -- | -- | -- | -- | -- |
| 546.13 | 1.09 | 3.66 | -- | 0.371 | -- | -- | -- | -0.4 | 17.2 | -- | -- | -- | -- |
| 534.39 | 1.08 | 3.64 | -- | -- | -2.7 | -- | -- | -0.365 | -- | 8.93 | 27 | -- | -- |
| 553.35 | 1.1 | 3.65 | -- | -- | -- | -- | -- | -0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 506.87 | wind | 1.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 3 | 506.87 | wind | 1.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 5 | 510.13 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 13 | 3 |
| 13 | 511.79 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 13 | 3 |
| 19 | 512.04 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 20 | 512.05 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 28 | 513.04 | atmosphere | 1000.0 | 30 | < th | dose dependent | rect. | 13 | 10 |
| 68 | 514.09 | wind | 3.0 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 77 | 514.53 | wind | 3.0 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 80 | 514.88 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 83 | 515.02 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 100 | 515.85 | wind | 1.0 | 10 | < th | dose independent | rect. | 13 | 12 |
| 103 | 516.02 | wind | 1.0 | 90 | < th | dose independent | rect. | 13 | 2 |
| 110 | 516.24 | temperature | 25.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 113 | 516.27 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 114 | 516.28 | wind | 3.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 120 | 516.56 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 128 | 517.09 | atmosphere | 1000.0 | 30 | < th | dose dependent | rect. | 13 | 20 |
| 141 | 517.30 | wind | 1.0 | 10 | < th | dose dependent | rect. | 13 | 5 |
| 150 | 517.76 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 156 | 518.01 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 157 | 518.01 | atmosphere | 1000.0 | 30 | < th | dose dependent | rect. | 13 | 17 |
| 167 | 518.24 | atmosphere | 1000.0 | 30 | < th | dose dependent | rect. | 13 | 15 |
| 182 | 518.59 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 4 | 3 |
| 188 | 518.63 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 1 | 6 |
| 195 | 518.75 | wind | 1.0 | 10 | < th | dose independent | rect. | 13 | 5 |
| 211 | 519.10 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 220 | 519.30 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 269 | 519.83 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 274 | 519.91 | radiation | 40.0 | 10 | > th | dose independent | rect. | 14 | 1 |
| 317 | 520.03 | wind | 7.0 | 720 | < th | dose independent | rect. | 5 | 7 |
| 326 | 520.10 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 13 | 3 |
| 328 | 520.14 | wind | 3.0 | 90 | < th | dose independent | rect. | 12 | 4 |
| 346 | 520.51 | humidity | 70.0 | 10 | < th | dose independent | rect. | 13 | 3 |
| 356 | 520.80 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 15 | 22 |
| 379 | 521.28 | atmosphere | 1000.0 | 30 | < th | dose dependent | sin | 18 | NA |
| 403 | 521.66 | wind | 1.0 | 10 | < th | dose dependent | rect. | 13 | 12 |
| 440 | 522.10 | wind | 7.0 | 90 | < th | dose independent | rect. | 1 | 11 |
| 441 | 522.11 | wind | 9.0 | 30 | < th | dose independent | sin | 0 | NA |
| 443 | 522.13 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 20 |
| 471 | 522.21 | radiation | 40.0 | 720 | < th | dose independent | rect. | 24 | 9 |
| 478 | 522.32 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 526 | 522.81 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 13 | 17 |
| 561 | 523.06 | wind | 9.0 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 596 | 523.34 | wind | 9.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 606 | 523.49 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 14 | 23 |
| 638 | 523.86 | wind | 3.0 | 720 | < th | dose dependent | rect. | 13 | 1 |
| 641 | 523.92 | wind | 9.0 | 30 | < th | dose independent | no | NA | NA |
| 712 | 524.47 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 718 | 524.51 | wind | 9.0 | 90 | < th | dose independent | rect. | 12 | 13 |
| 724 | 524.56 | humidity | 80.0 | 10 | < th | dose independent | rect. | 13 | 12 |
| 726 | 524.59 | wind | 9.0 | 30 | > th | dose dependent | sin | 3 | NA |
| 730 | 524.63 | temperature | 10.0 | 90 | > th | dose independent | rect. | 1 | 11 |
| 731 | 524.63 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 1 | 11 |
| 732 | 524.63 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 1 | 11 |
| 734 | 524.63 | temperature | 10.0 | 90 | > th | dose independent | rect. | 12 | 13 |
| 740 | 524.69 | radiation | 10.0 | 90 | > th | dose independent | rect. | 12 | 4 |
| 749 | 524.81 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 24 | 2 |
| 769 | 524.83 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 782 | 524.89 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 13 | 3 |
| 816 | 525.06 | wind | 9.0 | 90 | < th | dose dependent | rect. | 1 | 11 |
| 825 | 525.17 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 21 | 10 |
| 834 | 525.25 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 17 |
| 839 | 525.27 | wind | 1.0 | 30 | < th | dose dependent | rect. | 10 | 5 |
| 840 | 525.28 | wind | 1.0 | 30 | > th | dose independent | rect. | 11 | 12 |
| 854 | 525.33 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 13 | 18 |
| 856 | 525.35 | humidity | 80.0 | 90 | > th | dose independent | rect. | 9 | 12 |
| 861 | 525.38 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 13 | 6 |
| 874 | 525.40 | radiation | 10.0 | 10 | > th | dose independent | rect. | 13 | 3 |
| 879 | 525.43 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 6 | 15 |
| 882 | 525.46 | wind | 9.0 | 720 | < th | dose independent | rect. | 24 | 17 |
| 904 | 525.50 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 13 | 3 |
| 914 | 525.59 | humidity | 80.0 | 10 | < th | dose independent | rect. | 13 | 7 |
| 926 | 525.69 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 12 | 13 |
| 937 | 525.76 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 13 | 2 |
| 938 | 525.76 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 12 | 21 |
| 946 | 525.83 | humidity | 70.0 | 30 | < th | dose independent | rect. | 15 | 1 |
| 973 | 525.92 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 16 | 10 |
| 974 | 525.93 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 12 | 2 |
| 975 | 525.93 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 12 | 2 |
| 981 | 525.98 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 1 | 11 |
| 982 | 525.98 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 983 | 525.98 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 1 | 11 |
| 994 | 526.10 | wind | 9.0 | 30 | > th | dose dependent | rect. | 11 | 5 |