Os11g0112300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GCN5-like protein 1 (RT14 protein homolog).
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Os11g0112300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GCN5-like protein 1 (RT14 protein homolog).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.14 | 0.221 | 9.14 | 0.194 | 0.31 | 0.11 | -0.21 | -0.882 | 0.121 | 16.6 | 9.17 | 9 | -- | -- |
| 25.92 | 0.239 | 9.13 | 0.24 | 0.331 | 0.19 | 0.697 | -- | 0.126 | 14.8 | 9.17 | 9 | -- | -- |
| 22.24 | 0.22 | 9.14 | 0.196 | 0.311 | 0.113 | -- | -0.838 | 0.122 | 16.6 | 9.17 | 8 | -- | -- |
| 26.15 | 0.238 | 9.13 | 0.276 | 0.312 | 0.14 | -- | -- | 0.15 | 17.1 | 24.08 | 19 | -- | -- |
| 26.64 | 0.242 | 9.13 | 0.207 | -- | 0.0326 | -- | -0.855 | 0.126 | -- | 8.416 | 17 | -- | -- |
| 25.85 | 0.238 | 9.13 | 0.245 | 0.259 | -- | -0.831 | -- | 0.143 | 19.7 | -- | -- | -- | -- |
| 26.91 | 0.243 | 9.13 | 0.271 | 0.296 | -- | -- | -- | 0.145 | 18.1 | -- | -- | -- | -- |
| 30.9 | 0.26 | 9.13 | 0.251 | -- | 0.145 | -- | -- | 0.139 | -- | 49.98 | 27 | -- | -- |
| 28.2 | 0.247 | 9.13 | -- | 0.299 | 0.15 | -- | -- | 0.128 | 17 | 24.12 | 19 | -- | -- |
| 31.46 | 0.262 | 9.13 | 0.263 | -- | -- | -- | -- | 0.138 | -- | -- | -- | -- | -- |
| 28.85 | 0.251 | 9.14 | -- | 0.292 | -- | -- | -- | 0.115 | 18.1 | -- | -- | -- | -- |
| 31.97 | 0.263 | 9.13 | -- | -- | 0.469 | -- | -- | 0.0877 | -- | 60 | 46 | -- | -- |
| 33.28 | 0.269 | 9.13 | -- | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 6 | 21.05 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 10 | 21.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 13 | 21.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 74 | 21.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 81 | 21.25 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 107 | 21.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 9 |
| 157 | 21.43 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 14 |
| 169 | 21.45 | temperature | 10 | 10 | > th | dose dependent | sin | 10 | NA |
| 201 | 21.50 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 10 |
| 259 | 21.60 | radiation | 30 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 263 | 21.61 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 274 | 21.63 | humidity | 80 | 90 | < th | dose independent | rect. | 2 | 13 |
| 339 | 21.72 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 22 |
| 345 | 21.73 | humidity | 80 | 90 | < th | dose independent | sin | 3 | NA |
| 360 | 21.74 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 364 | 21.75 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 16 |
| 388 | 21.77 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 396 | 21.78 | temperature | 20 | 720 | > th | dose independent | sin | 14 | NA |
| 420 | 21.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 13 |
| 422 | 21.81 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 9 |
| 545 | 21.93 | radiation | 10 | 90 | < th | dose independent | rect. | 5 | 22 |
| 551 | 21.93 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 602 | 21.97 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 627 | 21.99 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 635 | 22.00 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 16 |
| 640 | 22.00 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 647 | 22.01 | wind | 1 | 30 | > th | dose independent | sin | 5 | NA |
| 652 | 22.01 | humidity | 90 | 30 | < th | dose dependent | sin | 3 | NA |
| 695 | 22.04 | humidity | 90 | 90 | < th | dose dependent | rect. | 2 | 13 |
| 728 | 22.06 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 13 |
| 736 | 22.07 | wind | 1 | 720 | > th | dose independent | rect. | 17 | 11 |
| 780 | 22.10 | temperature | 25 | 720 | < th | dose independent | sin | 10 | NA |
| 817 | 22.11 | radiation | 10 | 90 | < th | dose independent | rect. | 12 | 22 |
| 860 | 22.13 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 4 |
| 877 | 22.13 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 11 |
| 933 | 22.16 | radiation | 40 | 720 | < th | dose independent | rect. | 5 | 12 |
| 947 | 22.16 | humidity | 50 | 30 | > th | dose dependent | sin | 6 | NA |