BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0105500 Os12g0105500|AK109049
(280 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0105500 Phosphatidate cytidylyltransferase family protein 539 e-154
Os11g0105800 Phosphatidate cytidylyltransferase family protein 491 e-139
Os01g0832000 Phosphatidate cytidylyltransferase family protein 311 4e-85
Os04g0670700 Conserved hypothetical protein 90 2e-18
>Os12g0105500 Phosphatidate cytidylyltransferase family protein
Length = 280
Score = 539 bits (1389), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/280 (95%), Positives = 266/280 (95%)
Query: 1 GGKRSIDSPMESQVLRDXXXXXXXXXXXXXXLRFWEEVGNRALLDQKLCRKLVHITVGLV 60
GGKRSIDSPMESQVLRD LRFWEEVGNRALLDQKLCRKLVHITVGLV
Sbjct: 1 GGKRSIDSPMESQVLRDAGAAVLTGATALAVLRFWEEVGNRALLDQKLCRKLVHITVGLV 60
Query: 61 YFLMWPLFSADDVYAPFLASIVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDPRELLKGP 120
YFLMWPLFSADDVYAPFLASIVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDPRELLKGP
Sbjct: 61 YFLMWPLFSADDVYAPFLASIVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDPRELLKGP 120
Query: 121 LYYACAMTLATVIFWRTSPISIAVICNLCAGDGVADIAGRQLGRIKLPYNPDKSYAGSIA 180
LYYACAMTLATVIFWRTSPISIAVICNLCAGDGVADIAGRQLGRIKLPYNPDKSYAGSIA
Sbjct: 121 LYYACAMTLATVIFWRTSPISIAVICNLCAGDGVADIAGRQLGRIKLPYNPDKSYAGSIA 180
Query: 181 MFLAGFLASILYMCYFHLFGFVEESWTMVIAFGVTSLSAAIVESLPISTRLDDNLTVPLA 240
MFLAGFLASILYMCYFHLFGFVEESWTMVIAFGVTSLSAAIVESLPISTRLDDNLTVPLA
Sbjct: 181 MFLAGFLASILYMCYFHLFGFVEESWTMVIAFGVTSLSAAIVESLPISTRLDDNLTVPLA 240
Query: 241 SVLIGVLVFYYIGARNLCCMSADSSDISALVQNQMFLGRF 280
SVLIGVLVFYYIGARNLCCMSADSSDISALVQNQMFLGRF
Sbjct: 241 SVLIGVLVFYYIGARNLCCMSADSSDISALVQNQMFLGRF 280
>Os11g0105800 Phosphatidate cytidylyltransferase family protein
Length = 274
Score = 491 bits (1264), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/271 (88%), Positives = 250/271 (92%)
Query: 10 MESQVLRDXXXXXXXXXXXXXXLRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWPLFS 69
+ES +LRD LRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWPLFS
Sbjct: 4 LESPLLRDAGAAVLTGATALAVLRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWPLFS 63
Query: 70 ADDVYAPFLASIVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDPRELLKGPLYYACAMTL 129
ADDVYAPFLAS+VIAFNIIKVTLIGLGIVKDDGVINSMTRNGD RELLKGPLYYACA+TL
Sbjct: 64 ADDVYAPFLASLVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDRRELLKGPLYYACAITL 123
Query: 130 ATVIFWRTSPISIAVICNLCAGDGVADIAGRQLGRIKLPYNPDKSYAGSIAMFLAGFLAS 189
ATVIFWRTSPISIAVICNLCAGDGVADIAGR+ G +KLPYNPDKSYAGSIAMFLAGFLAS
Sbjct: 124 ATVIFWRTSPISIAVICNLCAGDGVADIAGRRFGHVKLPYNPDKSYAGSIAMFLAGFLAS 183
Query: 190 ILYMCYFHLFGFVEESWTMVIAFGVTSLSAAIVESLPISTRLDDNLTVPLASVLIGVLVF 249
ILYMCYFHLFGFVEESW+MVIAFGVTSL+AAIVESLPISTRLDDNLTVPLASVL+GVLVF
Sbjct: 184 ILYMCYFHLFGFVEESWSMVIAFGVTSLAAAIVESLPISTRLDDNLTVPLASVLVGVLVF 243
Query: 250 YYIGARNLCCMSADSSDISALVQNQMFLGRF 280
YY GARNLCCMSADSSDISALVQNQM L RF
Sbjct: 244 YYTGARNLCCMSADSSDISALVQNQMVLDRF 274
>Os01g0832000 Phosphatidate cytidylyltransferase family protein
Length = 246
Score = 311 bits (797), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 147/241 (60%), Positives = 184/241 (76%), Gaps = 1/241 (0%)
Query: 9 PMESQVLRDXXXXXXXXXXXXXXLRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWPLF 68
P S + D LRF+EE+ R + +QKL RKLVHIT+G+V+ L WPLF
Sbjct: 7 PEASGLAHDLGSAAVTAGVALALLRFFEELAKRGVFEQKLNRKLVHITIGMVFLLFWPLF 66
Query: 69 SADDVYAPFLASIVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDPRELLKGPLYYACAMT 128
S+ YAPFLA++ NII++ L+GLG++K++ ++ SM+R+GDPRELLKGPLYYA +T
Sbjct: 67 SSGS-YAPFLAAVAPGINIIRMLLLGLGVMKNEAMVKSMSRSGDPRELLKGPLYYATTIT 125
Query: 129 LATVIFWRTSPISIAVICNLCAGDGVADIAGRQLGRIKLPYNPDKSYAGSIAMFLAGFLA 188
AT IFWRTSPI+IA+ICNLCAGDG+ADI GR+LG+ KLPYNP+KSYAGSIAM LAGF+A
Sbjct: 126 FATSIFWRTSPIAIALICNLCAGDGIADIVGRRLGQEKLPYNPNKSYAGSIAMALAGFMA 185
Query: 189 SILYMCYFHLFGFVEESWTMVIAFGVTSLSAAIVESLPISTRLDDNLTVPLASVLIGVLV 248
SI YM YF FGF+EESW++ F V S++AA+VES PIST LDDNLTVPL S L+G LV
Sbjct: 186 SIGYMHYFQSFGFIEESWSLAFGFLVVSVTAALVESHPISTHLDDNLTVPLTSFLVGSLV 245
Query: 249 F 249
F
Sbjct: 246 F 246
>Os04g0670700 Conserved hypothetical protein
Length = 104
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 153 GVADIAGRQLGRIKLPYNPDKSYAGSIAMFLAGFLASILYMCYFHLFGFVEESWTMVIA- 211
G ADI GR+ G KLP+N +KS+ GSI+MF++GFL S L + YF G+ W + +
Sbjct: 1 GFADIVGRRYGSAKLPFNENKSWIGSISMFISGFLLSALMLFYFSCLGYFTVCWDLALGK 60
Query: 212 FGVTSLSAAIVESLPISTRLDDNLTVPLASVLIGVLVFYY 251
+ +L+A +VE +P++ +DDN++VPLA++L L+F Y
Sbjct: 61 LALVALAATVVECIPVNDVVDDNISVPLATMLAAYLLFGY 100
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.142 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,391,548
Number of extensions: 321660
Number of successful extensions: 702
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 4
Length of query: 280
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 180
Effective length of database: 11,814,401
Effective search space: 2126592180
Effective search space used: 2126592180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)