Os12g0105500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphatidate cytidylyltransferase family protein.
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Os12g0105500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphatidate cytidylyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.87 | 0.514 | 6.29 | 1.89 | 1.08 | -1.04 | -0.313 | -0.452 | 0.442 | 3 | 74.45 | 1303 | -- | -- |
| 120.11 | 0.51 | 6.28 | 1.92 | 1.08 | -1.08 | -0.345 | -- | 0.445 | 3.01 | 74.39 | 1308 | -- | -- |
| 120.19 | 0.511 | 6.29 | 1.9 | 1.08 | -1.04 | -- | -0.466 | 0.44 | 3.02 | 74.41 | 1303 | -- | -- |
| 120.5 | 0.511 | 6.28 | 1.94 | 1.08 | -1.09 | -- | -- | 0.447 | 3.05 | 74.5 | 1309 | -- | -- |
| 153.88 | 0.578 | 6.27 | 1.81 | -- | -1.34 | -- | 0.75 | 0.543 | -- | 113.9 | 201 | -- | -- |
| 147.42 | 0.569 | 6.26 | 1.72 | 0.952 | -- | -0.528 | -- | 0.528 | 3.13 | -- | -- | -- | -- |
| 148.29 | 0.57 | 6.26 | 1.73 | 0.953 | -- | -- | -- | 0.531 | 3.25 | -- | -- | -- | -- |
| 153.89 | 0.578 | 6.26 | 1.78 | -- | -1.27 | -- | -- | 0.56 | -- | 131 | 195 | -- | -- |
| 210.89 | 0.676 | 6.28 | -- | 0.991 | -0.809 | -- | -- | 0.405 | 3.19 | 94.34 | 1488 | -- | -- |
| 199.73 | 0.66 | 6.26 | 1.77 | -- | -- | -- | -- | 0.556 | -- | -- | -- | -- | -- |
| 227.58 | 0.706 | 6.3 | -- | 0.987 | -- | -- | -- | 0.338 | 3.25 | -- | -- | -- | -- |
| 236.82 | 0.717 | 6.3 | -- | -- | -1.25 | -- | -- | 0.361 | -- | 131.7 | 156 | -- | -- |
| 282.84 | 0.785 | 6.3 | -- | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.36 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 3 |
| 2 | 119.43 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 3 | 120.21 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 5 |
| 4 | 120.25 | humidity | 70 | 1440 | < th | dose dependent | rect. | 12 | 22 |
| 7 | 120.33 | humidity | 70 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 8 | 120.34 | humidity | 70 | 1440 | < th | dose dependent | sin | 18 | NA |
| 27 | 120.42 | humidity | 80 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 88 | 120.63 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 125 | 120.71 | humidity | 70 | 1440 | < th | dose dependent | no | NA | NA |
| 255 | 120.92 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 263 | 120.94 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 276 | 121.01 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 280 | 121.02 | humidity | 60 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 285 | 121.03 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 11 |
| 287 | 121.03 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 297 | 121.05 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 298 | 121.05 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 311 | 121.09 | humidity | 60 | 1440 | > th | dose independent | sin | 18 | NA |
| 317 | 121.12 | humidity | 60 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 379 | 121.24 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 13 |
| 393 | 121.30 | humidity | 60 | 1440 | < th | dose independent | sin | 18 | NA |
| 487 | 121.52 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 588 | 121.73 | humidity | 60 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 592 | 121.74 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 597 | 121.74 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 603 | 121.74 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 21 |
| 634 | 121.75 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 636 | 121.75 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 638 | 121.76 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 720 | 121.83 | humidity | 70 | 1440 | < th | dose independent | sin | 11 | NA |
| 777 | 121.95 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 868 | 122.04 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 926 | 122.22 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 2 |