BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0105500 Os12g0105500|AK109049
(280 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58560.1 | chr5:23670513-23672570 FORWARD LENGTH=308 267 6e-72
AT5G04490.1 | chr5:1279867-1281587 FORWARD LENGTH=305 193 1e-49
>AT5G58560.1 | chr5:23670513-23672570 FORWARD LENGTH=308
Length = 307
Score = 267 bits (682), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 130/239 (54%), Positives = 170/239 (71%), Gaps = 1/239 (0%)
Query: 11 ESQVLRDXXXXXXXXXXXXXXLRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWPLFSA 70
E+ VL D L FW E+G R + DQKL RKLVHI +GLV+ L WPLFS+
Sbjct: 70 ENSVLSDVCAFGVTSIVAFSCLGFWGEIGKRGIFDQKLIRKLVHINIGLVFMLCWPLFSS 129
Query: 71 DDVYAPFLASIVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDPRELLKGPLYYACAMTLA 130
+ AS+V NI+++ L+GLG+ D+G I SM+R+GD RELLKGPLYY ++T A
Sbjct: 130 G-IQGALFASLVPGLNIVRMLLLGLGVYHDEGTIKSMSRHGDRRELLKGPLYYVLSITSA 188
Query: 131 TVIFWRTSPISIAVICNLCAGDGVADIAGRQLGRIKLPYNPDKSYAGSIAMFLAGFLASI 190
+ +W++SPI+IAVICNLCAGDG+ADI GR+ G KLPYN +KS+AGSI M AGFLAS+
Sbjct: 189 CIYYWKSSPIAIAVICNLCAGDGMADIVGRRFGTEKLPYNKNKSFAGSIGMATAGFLASV 248
Query: 191 LYMCYFHLFGFVEESWTMVIAFGVTSLSAAIVESLPISTRLDDNLTVPLASVLIGVLVF 249
YM YF FG++E+S M++ F V S+++A+VESLPIST +DDNLT+ L S L G L+F
Sbjct: 249 AYMYYFASFGYIEDSGGMILRFLVISIASALVESLPISTDIDDNLTISLTSALAGFLLF 307
>AT5G04490.1 | chr5:1279867-1281587 FORWARD LENGTH=305
Length = 304
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 139/218 (63%), Gaps = 2/218 (0%)
Query: 35 WEEVGNRALLDQKLCRKLVHITVGLVYFLMWPLFSADDVYAPFLASIVIAFNIIKVTLIG 94
+E + R ++ Q L RKLVHI GL++ L WP+FS A + A+ V N +++ + G
Sbjct: 88 FESLTKRNVIQQSLSRKLVHILSGLLFVLAWPIFSGS-TEARYFAAFVPLVNGLRLVING 146
Query: 95 LGIVKDDGVINSMTRNGDPRELLKGPLYYACAMTLATVIFWRTSPISIAVICNLCAGDGV 154
L I + +I S+TR G ELLKGPL+Y A+ + V FWR SPI + + +C GDG+
Sbjct: 147 LSISPNSMLIKSVTREGRAEELLKGPLFYVLALLFSAVFFWRESPIGMISLAMMCGGDGI 206
Query: 155 ADIAGRQLGRIKLPYNPDKSYAGSIAMFLAGFLASILYMCYFHLFGFVEESW-TMVIAFG 213
ADI GR+ G K+PYNP KS+AGSI+MF+ GF SI + Y+ G++ +W T +
Sbjct: 207 ADIMGRKFGSTKIPYNPRKSWAGSISMFIFGFFISIALLYYYSSLGYLHMNWETTLQRVA 266
Query: 214 VTSLSAAIVESLPISTRLDDNLTVPLASVLIGVLVFYY 251
+ S+ A +VESLPI+ +LDDN++VPLA++L L F Y
Sbjct: 267 MVSMVATVVESLPITDQLDDNISVPLATILAAYLSFGY 304
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.142 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,467,757
Number of extensions: 212894
Number of successful extensions: 556
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 183
Effective length of database: 8,447,217
Effective search space: 1545840711
Effective search space used: 1545840711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)