BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0678000 Os11g0678000|J100024I12
         (78 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0678000  Protein kinase domain containing protein            160   2e-40
Os06g0232100  Protein kinase-like domain containing protein        67   2e-12
Os02g0743500  Similar to EDR1                                      67   3e-12

>Os11g0678000 Protein kinase domain containing protein
          Length = 78

 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  LQILFNNYIFCLCRNFDYHVVFQNITYIFLQARGMNYLHNSSPPIVHRDLKSSNLLVDKN 60
          LQILFNNYIFCLCRNFDYHVVFQNITYIFLQARGMNYLHNSSPPIVHRDLKSSNLLVDKN
Sbjct: 1  LQILFNNYIFCLCRNFDYHVVFQNITYIFLQARGMNYLHNSSPPIVHRDLKSSNLLVDKN 60

Query: 61 WTVKVNPKVSSFFISFMY 78
          WTVKVNPKVSSFFISFMY
Sbjct: 61 WTVKVNPKVSSFFISFMY 78



>Os06g0232100 Protein kinase-like domain containing protein
          Length = 598

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/34 (85%), Positives = 30/34 (88%)

Query: 32  ARGMNYLHNSSPPIVHRDLKSSNLLVDKNWTVKV 65
           ARGMNYLHN SP +VHRDLKS NLLVDKNW VKV
Sbjct: 430 ARGMNYLHNCSPVVVHRDLKSPNLLVDKNWVVKV 463



>Os02g0743500 Similar to EDR1
          Length = 991

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/34 (85%), Positives = 30/34 (88%)

Query: 32  ARGMNYLHNSSPPIVHRDLKSSNLLVDKNWTVKV 65
           ARGMNYLHN +P IVHRDLKS NLLVDKNW VKV
Sbjct: 824 ARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKV 857



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.142    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,501,304
Number of extensions: 77326
Number of successful extensions: 1570
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1605
Number of HSP's successfully gapped: 3
Length of query: 78
Length of database: 17,035,801
Length adjustment: 49
Effective length of query: 29
Effective length of database: 14,477,315
Effective search space: 419842135
Effective search space used: 419842135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)