Os02g0743500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to EDR1.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0743500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to EDR1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.67 | 0.197 | 11.8 | 1.22 | 0.741 | -0.874 | -0.303 | 1.5 | 0.281 | 23.5 | 22.65 | 811 | -- | -- |
| 19.7 | 0.207 | 11.8 | 1.14 | 0.628 | -0.799 | -0.111 | -- | 0.263 | 0.253 | 16.5 | 6486 | -- | -- |
| 17.99 | 0.198 | 11.8 | 1.22 | 0.747 | -0.88 | -- | 1.44 | 0.273 | 23.6 | 22.99 | 841 | -- | -- |
| 19.14 | 0.204 | 11.9 | 0.941 | 0.681 | -0.691 | -- | -- | 0.221 | 0.23 | 21.03 | 2246 | -- | -- |
| 25.68 | 0.237 | 11.8 | 1.07 | -- | -1.08 | -- | 0.91 | 0.283 | -- | 20.8 | 22 | -- | -- |
| 31.44 | 0.263 | 11.9 | 0.693 | 0.561 | -- | -0.211 | -- | 0.0636 | 0.565 | -- | -- | -- | -- |
| 31.63 | 0.263 | 11.9 | 0.701 | 0.562 | -- | -- | -- | 0.0646 | 0.585 | -- | -- | -- | -- |
| 25.26 | 0.235 | 11.8 | 0.949 | -- | -1.14 | -- | -- | 0.252 | -- | 17.87 | 16 | -- | -- |
| 38.24 | 0.288 | 11.9 | -- | 0.674 | -0.541 | -- | -- | 0.0118 | 23.7 | 25.21 | 859 | -- | -- |
| 51.44 | 0.335 | 11.9 | 0.721 | -- | -- | -- | -- | 0.0743 | -- | -- | -- | -- | -- |
| 44.59 | 0.312 | 11.9 | -- | 0.573 | -- | -- | -- | -0.0134 | 0.645 | -- | -- | -- | -- |
| 47.53 | 0.322 | 11.9 | -- | -- | -0.86 | -- | -- | 0.115 | -- | 19.7 | 18 | -- | -- |
| 65.15 | 0.377 | 11.9 | -- | -- | -- | -- | -- | -0.00566 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.44 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 2 | 17.46 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 3 | 17.49 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 27 | 17.58 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 64 | 17.70 | radiation | 1.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 67 | 17.71 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 68 | 17.71 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 88 | 17.77 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 158 | 17.82 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 159 | 17.83 | radiation | 1.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 182 | 17.84 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 7 |
| 184 | 17.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 210 | 17.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 211 | 17.85 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 217 | 17.86 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 254 | 17.92 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 22 |
| 255 | 17.92 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 273 | 17.94 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 298 | 17.95 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 342 | 17.97 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 507 | 18.05 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 508 | 18.05 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 512 | 18.06 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 531 | 18.06 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 542 | 18.08 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 586 | 18.08 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 637 | 18.13 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 11 |
| 797 | 18.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 812 | 18.24 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 813 | 18.24 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 817 | 18.25 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 848 | 18.27 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 863 | 18.29 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 882 | 18.32 | temperature | 20.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 884 | 18.32 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 885 | 18.32 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 906 | 18.33 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 908 | 18.33 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 17 |
| 996 | 18.36 | radiation | 1.0 | 14400 | < th | dose dependent | no | NA | NA |