Os11g0678000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os11g0678000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.83 | 0.567 | 10.1 | -2.08 | 1.48 | 1.24 | -1.11 | 1.4 | -0.218 | 2.22 | 61.58 | 98 | -- | -- |
| 148.93 | 0.568 | 10.1 | -2 | 1.5 | 1.25 | -0.255 | -- | -0.211 | 2.29 | 60.91 | 98 | -- | -- |
| 148.28 | 0.567 | 10.1 | -2.05 | 1.51 | 1.23 | -- | 0.587 | -0.22 | 2.21 | 61.08 | 112 | -- | -- |
| 149.17 | 0.569 | 10.1 | -2 | 1.51 | 1.24 | -- | -- | -0.21 | 2.3 | 61 | 99 | -- | -- |
| 203.85 | 0.665 | 10.1 | -2 | -- | 2.36 | -- | 0.437 | -0.0968 | -- | 64.84 | 81 | -- | -- |
| 178.99 | 0.627 | 10.1 | -1.99 | 2.38 | -- | 0.0682 | -- | -0.266 | 2.61 | -- | -- | -- | -- |
| 179.01 | 0.627 | 10.1 | -2 | 2.38 | -- | -- | -- | -0.266 | 2.61 | -- | -- | -- | -- |
| 204.5 | 0.666 | 10.1 | -1.98 | -- | 2.37 | -- | -- | -0.0975 | -- | 64.58 | 73 | -- | -- |
| 253.91 | 0.742 | 10.1 | -- | 1.48 | 1.27 | -- | -- | 0.00248 | 2.29 | 58.77 | 96 | -- | -- |
| 509.78 | 1.06 | 10.1 | -1.89 | -- | -- | -- | -- | -0.206 | -- | -- | -- | -- | -- |
| 283.92 | 0.788 | 10.1 | -- | 2.34 | -- | -- | -- | -0.0438 | 2.6 | -- | -- | -- | -- |
| 306.86 | 0.819 | 10 | -- | -- | 2.49 | -- | -- | 0.078 | -- | 58.77 | 96 | -- | -- |
| 604.4 | 1.15 | 10.1 | -- | -- | -- | -- | -- | 0.00395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.67 | humidity | 50 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 4 | 137.60 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 16 |
| 11 | 138.28 | radiation | 30 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 21 | 139.04 | humidity | 50 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 23 | 139.12 | humidity | 60 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 29 | 139.58 | radiation | 40 | 270 | < th | dose dependent | rect. | 12 | 18 |
| 36 | 139.78 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 39 | 139.89 | humidity | 60 | 90 | > th | dose dependent | sin | 2 | NA |
| 48 | 140.33 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 20 |
| 56 | 140.80 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 19 |
| 61 | 140.98 | humidity | 60 | 10 | > th | dose dependent | sin | 1 | NA |
| 68 | 141.09 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 16 |
| 80 | 141.47 | humidity | 70 | 270 | > th | dose independent | rect. | 1 | 16 |
| 102 | 141.89 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 15 |
| 103 | 141.91 | radiation | 10 | 270 | < th | dose dependent | sin | 3 | NA |
| 104 | 141.93 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 112 | 142.11 | humidity | 90 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 119 | 142.24 | humidity | 60 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 122 | 142.29 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 18 |
| 158 | 142.84 | humidity | 60 | 10 | > th | dose independent | rect. | 13 | 19 |
| 159 | 142.85 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 21 |
| 172 | 143.10 | radiation | 20 | 270 | < th | dose independent | rect. | 12 | 18 |
| 181 | 143.23 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 8 |
| 193 | 143.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 202 | 143.44 | radiation | 10 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 211 | 143.53 | humidity | 50 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 213 | 143.54 | humidity | 70 | 270 | > th | dose independent | rect. | 11 | 20 |
| 222 | 143.60 | radiation | 1 | 270 | > th | dose independent | sin | 2 | NA |
| 236 | 143.74 | radiation | 30 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 239 | 143.80 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 19 |
| 245 | 143.82 | humidity | 70 | 270 | > th | dose independent | rect. | 12 | 18 |
| 291 | 144.29 | humidity | 50 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 309 | 144.49 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 362 | 144.90 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 17 |
| 406 | 145.31 | radiation | 1 | 270 | < th | dose independent | sin | 2 | NA |
| 429 | 145.45 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 14 |
| 435 | 145.48 | humidity | 70 | 90 | > th | dose independent | rect. | 1 | 22 |
| 442 | 145.54 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 19 |
| 483 | 145.77 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 20 |
| 517 | 145.97 | humidity | 90 | 90 | < th | dose dependent | sin | 3 | NA |
| 533 | 146.02 | radiation | 10 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 560 | 146.18 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 562 | 146.20 | humidity | 60 | 90 | > th | dose dependent | no | NA | NA |
| 575 | 146.25 | humidity | 60 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 618 | 146.47 | humidity | 60 | 270 | > th | dose independent | rect. | 11 | 8 |
| 677 | 146.76 | radiation | 10 | 270 | > th | dose independent | rect. | 15 | 21 |
| 687 | 146.81 | humidity | 60 | 10 | > th | dose independent | rect. | 13 | 10 |
| 700 | 146.85 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 725 | 146.99 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 775 | 147.27 | humidity | 80 | 90 | > th | dose independent | sin | 2 | NA |
| 820 | 147.47 | radiation | 10 | 270 | < th | dose independent | sin | 5 | NA |
| 878 | 147.70 | humidity | 60 | 90 | > th | dose dependent | rect. | 19 | 23 |