FiT-DB / Search/ Help/ Sample detail

Os06g0232100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0176) R2 : 0.556
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.03 (0.044) R2dC : 0.529 R2C : 0.529
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.173 (0.037) R2dN8 : 0.0274 R2N8 : 0.0265
σ : 0.332
deviance : 50.23
__
_____
C
peak time of C : 3.21
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.23 0.271 10.2 0.459 1.07 0.888 -0.859 1.25 0.292 2.97 0.7599 1408 -- --
34.33 0.273 10.1 0.594 1.06 0.874 -1.08 -- 0.307 2.64 1.21 1358 -- --
34.85 0.275 10.2 0.425 1.11 0.966 -- 1.67 0.275 2.55 0.7108 1348 -- --
36.7 0.282 10.1 0.586 1.11 0.77 -- -- 0.324 2.67 1.61 1351 -- --
42.61 0.304 10.2 0.554 -- 1.77 -- 0.521 0.303 -- 1.093 1865 -- --
40.89 0.3 10.2 0.452 1.02 -- -1.03 -- 0.219 3.15 -- -- -- --
44.34 0.312 10.2 0.473 1.02 -- -- -- 0.225 3.21 -- -- -- --
40.09 0.295 10.1 0.667 -- 1.65 -- -- 0.362 -- 0.9665 1865 -- --
45.84 0.315 10.1 -- 1.13 0.74 -- -- 0.323 2.46 1.766 1304 -- --
103.02 0.474 10.1 0.516 -- -- -- -- 0.252 -- -- -- -- --
50.23 0.332 10.2 -- 1.03 -- -- -- 0.173 3.21 -- -- -- --
49.76 0.329 10.1 -- -- 1.67 -- -- 0.331 -- 1.61 1862 -- --
110.05 0.49 10.2 -- -- -- -- -- 0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.58 radiation 1 720 < th dose independent rect. 5 19
2 31.63 radiation 1 720 > th dose independent sin 14 NA
3 31.72 radiation 1 720 < th dose independent sin 14 NA
4 31.79 radiation 1 720 > th dose independent rect. 16 14
7 31.95 temperature 25 720 > th dose dependent rect. 15 18
9 32.00 radiation 1 720 < th dose dependent rect. 5 13
12 32.02 radiation 1 720 < th dose dependent sin 19 NA
13 32.02 radiation 1 720 < th dose dependent rect. 5 19
16 32.13 temperature 25 720 > th dose dependent rect. 15 10
26 32.25 radiation 1 720 < th dose independent sin 18 NA
35 32.35 temperature 25 720 > th dose dependent sin 14 NA
45 32.41 radiation 1 720 < th dose independent rect. 15 8
51 32.44 radiation 1 720 > th dose independent rect. 15 4
62 32.46 radiation 1 720 < th dose independent rect. 14 17
64 32.47 radiation 1 720 < th dose independent sin 0 NA
69 32.51 temperature 25 720 > th dose dependent rect. 17 1
78 32.55 radiation 1 720 < th dose independent rect. 4 14
87 32.59 wind 7 43200 < th dose independent rect. 12 2
90 32.61 wind 7 43200 > th dose independent rect. 12 2
97 32.65 radiation 1 720 > th dose independent rect. 17 2
155 32.81 radiation 1 1440 < th dose independent rect. 11 19
157 32.83 wind 5 43200 > th dose dependent rect. 12 2
160 32.85 humidity 90 43200 < th dose independent rect. 19 10
163 32.86 radiation 1 720 < th dose dependent sin 0 NA
175 32.92 radiation 1 720 < th dose independent rect. 11 13
179 32.93 radiation 1 1440 < th dose dependent sin 22 NA
183 32.93 radiation 1 1440 < th dose dependent rect. 11 12
192 32.95 radiation 1 1440 < th dose dependent rect. 11 8
214 33.00 radiation 1 1440 > th dose independent rect. 11 19
242 33.03 humidity 80 43200 > th dose dependent rect. 16 11
263 33.07 humidity 80 43200 > th dose dependent rect. 15 13
329 33.18 humidity 80 43200 > th dose dependent rect. 19 6
345 33.20 wind 7 43200 > th dose dependent rect. 11 10
397 33.27 wind 7 43200 > th dose independent rect. 11 11
398 33.27 radiation 1 720 < th dose independent rect. 3 23
399 33.27 humidity 80 43200 > th dose dependent sin 14 NA
411 33.29 humidity 80 1440 < th dose independent rect. 6 13
427 33.31 radiation 1 1440 < th dose independent rect. 11 8
458 33.33 humidity 80 1440 > th dose independent rect. 6 13
466 33.34 humidity 70 1440 > th dose independent rect. 18 21
467 33.34 radiation 1 720 < th dose dependent sin 14 NA
479 33.35 wind 7 43200 < th dose independent rect. 11 11
532 33.40 radiation 1 720 > th dose independent rect. 7 23
533 33.40 radiation 1 720 > th dose independent rect. 15 23
534 33.40 humidity 80 43200 > th dose dependent rect. 20 4
592 33.46 radiation 1 720 > th dose independent rect. 13 23
650 33.52 radiation 1 1440 > th dose independent rect. 11 8
682 33.53 radiation 1 720 < th dose independent rect. 1 23
735 33.57 wind 7 43200 > th dose independent sin 23 NA
752 33.58 humidity 90 43200 < th dose independent sin 12 NA
771 33.59 wind 7 43200 < th dose independent sin 23 NA
772 33.59 humidity 90 43200 < th dose independent rect. 23 3
789 33.59 wind 7 43200 > th dose dependent rect. 19 1
853 33.63 humidity 80 1440 < th dose independent sin 1 NA
858 33.63 wind 7 43200 > th dose independent rect. 5 11
872 33.63 wind 7 43200 > th dose dependent rect. 11 19
888 33.64 wind 7 43200 > th dose independent rect. 11 19
889 33.64 temperature 25 1440 > th dose dependent rect. 21 1
907 33.65 wind 7 43200 < th dose independent rect. 5 11
940 33.66 radiation 1 720 > th dose independent rect. 7 12
957 33.66 radiation 1 1440 < th dose dependent rect. 2 17
965 33.66 radiation 1 1440 < th dose dependent rect. 21 22
975 33.67 humidity 90 43200 > th dose independent rect. 20 9
983 33.67 wind 7 43200 < th dose independent rect. 10 20
986 33.67 radiation 1 1440 < th dose dependent no NA NA