BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0644600 Os11g0644600|009-027-H10
         (167 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0644600  Conserved hypothetical protein                      305   1e-83
Os12g0529900  Conserved hypothetical protein                       90   8e-19
Os12g0530728                                                       89   1e-18
Os04g0156200  Prefoldin domain containing protein                  77   8e-15

>Os11g0644600 Conserved hypothetical protein
          Length = 167

 Score =  305 bits (781), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 152/167 (91%), Positives = 152/167 (91%)

Query: 1   MEKTLETLSLEMKKIHAEKDAAAAMVLQKSDESENLRAELKNLHKSISELRIRCNDLTDH 60
           MEKTLETLSLEMKKIHAEKDAAAAMVLQKSDESENLRAELKNLHKSISELRIRCNDLTDH
Sbjct: 1   MEKTLETLSLEMKKIHAEKDAAAAMVLQKSDESENLRAELKNLHKSISELRIRCNDLTDH 60

Query: 61  SSRLQADKNSVMRALSNEKSESTKLRLKLRELESYVSNKDNEIGILNSEAEDREGMVDGM 120
           SSRLQADKNSVMRALSNEKSESTKLRLKLRELESYVSNKDNEIGILNSEAEDREGMVDGM
Sbjct: 61  SSRLQADKNSVMRALSNEKSESTKLRLKLRELESYVSNKDNEIGILNSEAEDREGMVDGM 120

Query: 121 SRQFEQLRIAAAEAHRRGKNGVWTWMCHPXXXXXXXXXXXXXXXSRR 167
           SRQFEQLRIAAAEAHRRGKNGVWTWMCHP               SRR
Sbjct: 121 SRQFEQLRIAAAEAHRRGKNGVWTWMCHPATTTVLAAASVVYAASRR 167



>Os12g0529900 Conserved hypothetical protein
          Length = 269

 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 81/139 (58%)

Query: 8   LSLEMKKIHAEKDAAAAMVLQKSDESENLRAELKNLHKSISELRIRCNDLTDHSSRLQAD 67
           L  ++++I A K AA     +K  ++  LR ELK LH S+S+L+  C++L    S L  +
Sbjct: 111 LKQKVEEIQASKGAAEEAGREKDAQAVKLRNELKELHVSMSQLQASCDELDTKRSLLNDE 170

Query: 68  KNSVMRALSNEKSESTKLRLKLRELESYVSNKDNEIGILNSEAEDREGMVDGMSRQFEQL 127
           KNSV  AL  EK+E+ KL+ K+  +E+    KD EIG L     ++   +D + +  EQL
Sbjct: 171 KNSVQEALDAEKAEACKLKSKIEAIENCNVEKDGEIGKLKVALMEKREKIDVLIKDIEQL 230

Query: 128 RIAAAEAHRRGKNGVWTWM 146
            +  AEAHR+ K G+W W+
Sbjct: 231 NLEVAEAHRKRKGGIWAWL 249



>Os12g0530728 
          Length = 511

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 81/139 (58%)

Query: 8   LSLEMKKIHAEKDAAAAMVLQKSDESENLRAELKNLHKSISELRIRCNDLTDHSSRLQAD 67
           L  ++++I A K AA     +K  ++  LR ELK LH S+S+L+  C++L    S L  +
Sbjct: 353 LKQKVEEIQASKGAAEEAGREKDAQAVKLRNELKELHVSMSQLQASCDELDTKRSLLNDE 412

Query: 68  KNSVMRALSNEKSESTKLRLKLRELESYVSNKDNEIGILNSEAEDREGMVDGMSRQFEQL 127
           KNSV  AL  EK+E+ KL+ K+  +E+    KD EIG L     ++   +D + +  EQL
Sbjct: 413 KNSVQEALDAEKAEACKLKSKIEAIENCNVEKDGEIGKLKVALMEKREKIDVLIKDIEQL 472

Query: 128 RIAAAEAHRRGKNGVWTWM 146
            +  AEAHR+ K G+W W+
Sbjct: 473 NLEVAEAHRKRKGGIWAWL 491



>Os04g0156200 Prefoldin domain containing protein
          Length = 791

 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 79/135 (58%)

Query: 12  MKKIHAEKDAAAAMVLQKSDESENLRAELKNLHKSISELRIRCNDLTDHSSRLQADKNSV 71
           +++I   K+AA  +   K+ E++ LRAEL  +  S+S+L+   N+L    S L  +KNS 
Sbjct: 651 IEEIQVSKEAAEEVGRNKNAEADRLRAELVKIQVSLSQLQASYNELDAKHSLLNDEKNSA 710

Query: 72  MRALSNEKSESTKLRLKLRELESYVSNKDNEIGILNSEAEDREGMVDGMSRQFEQLRIAA 131
            +AL  EK E+ KL+ K  ELE+Y + KD E G L +  E+++  +D + +  E LR+A 
Sbjct: 711 QKALDVEKVEAYKLKSKFEELENYKAEKDEEAGKLKAALEEKKSEIDVLIKDNELLRLAI 770

Query: 132 AEAHRRGKNGVWTWM 146
           AEA  + K  + + +
Sbjct: 771 AEAQEKNKGSILSCL 785



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.124    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,288,110
Number of extensions: 144548
Number of successful extensions: 864
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 864
Number of HSP's successfully gapped: 5
Length of query: 167
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 74
Effective length of database: 12,179,899
Effective search space: 901312526
Effective search space used: 901312526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)