Os12g0529900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0529900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.48 | 0.359 | 13.7 | 0.276 | 0.388 | -0.734 | 0.17 | 2.42 | -0.553 | 3.28 | 17.73 | 2649 | -- | -- |
| 64.88 | 0.375 | 13.8 | -0.305 | 0.352 | -0.691 | 0.543 | -- | -0.661 | 3.96 | 16.34 | 6966 | -- | -- |
| 58.52 | 0.356 | 13.7 | 0.274 | 0.385 | -0.74 | -- | 2.46 | -0.556 | 3.13 | 17.5 | 2598 | -- | -- |
| 64.61 | 0.374 | 13.8 | -0.272 | 0.348 | -0.845 | -- | -- | -0.664 | 3.36 | 12.18 | 7013 | -- | -- |
| 64.54 | 0.374 | 13.7 | 0.215 | -- | -0.795 | -- | 2.45 | -0.557 | -- | 17.73 | 1803 | -- | -- |
| 75.65 | 0.408 | 13.8 | -0.692 | 0.324 | -- | 0.394 | -- | -0.891 | 3.85 | -- | -- | -- | -- |
| 76.09 | 0.408 | 13.8 | -0.697 | 0.325 | -- | -- | -- | -0.893 | 3.61 | -- | -- | -- | -- |
| 70.87 | 0.392 | 13.8 | -0.287 | -- | -0.801 | -- | -- | -0.698 | -- | 12.44 | 6186 | -- | -- |
| 66.02 | 0.378 | 13.8 | -- | 0.338 | -0.995 | -- | -- | -0.599 | 3.38 | 11.59 | 7656 | -- | -- |
| 81.96 | 0.423 | 13.8 | -0.684 | -- | -- | -- | -- | -0.885 | -- | -- | -- | -- | -- |
| 88.9 | 0.441 | 13.8 | -- | 0.311 | -- | -- | -- | -0.816 | 3.63 | -- | -- | -- | -- |
| 72.33 | 0.396 | 13.8 | -- | -- | -0.975 | -- | -- | -0.595 | -- | 10.6 | 7629 | -- | -- |
| 94.29 | 0.453 | 13.8 | -- | -- | -- | -- | -- | -0.809 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.95 | radiation | 40 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 5 | 56.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 6 | 56.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 7 | 56.06 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 8 | 56.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 12 | 56.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 16 | 56.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 19 | 56.68 | radiation | 40 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 20 | 56.69 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 31 | 56.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 33 | 56.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 35 | 57.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 39 | 57.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 40 | 57.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 43 | 57.20 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 54 | 57.30 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 56 | 57.31 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 59 | 57.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 60 | 57.35 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 61 | 57.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 63 | 57.38 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 69 | 57.41 | wind | 3 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 72 | 57.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 75 | 57.47 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 8 |
| 77 | 57.48 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 78 | 57.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 79 | 57.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 80 | 57.49 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 81 | 57.50 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 84 | 57.51 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 87 | 57.52 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 91 | 57.54 | radiation | 40 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 93 | 57.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 105 | 57.60 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 120 | 57.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 122 | 57.66 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 125 | 57.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 126 | 57.66 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 7 |
| 139 | 57.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 12 |
| 145 | 57.68 | wind | 1 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 146 | 57.68 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 148 | 57.69 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 161 | 57.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 169 | 57.74 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 171 | 57.74 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 180 | 57.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 184 | 57.78 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 8 |
| 193 | 57.80 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 209 | 57.83 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 212 | 57.83 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 222 | 57.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 224 | 57.85 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 228 | 57.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 251 | 57.89 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 273 | 57.92 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 274 | 57.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 275 | 57.92 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 290 | 57.94 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 337 | 57.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 351 | 57.99 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 352 | 57.99 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 360 | 58.00 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 375 | 58.01 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 397 | 58.03 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 412 | 58.04 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 414 | 58.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 418 | 58.04 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 420 | 58.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 423 | 58.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 437 | 58.06 | temperature | 15 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 440 | 58.06 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 442 | 58.06 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 464 | 58.07 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 492 | 58.10 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 493 | 58.10 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 506 | 58.11 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 522 | 58.13 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 527 | 58.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 542 | 58.14 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 548 | 58.15 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 557 | 58.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 559 | 58.16 | temperature | 15 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 583 | 58.18 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 624 | 58.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 656 | 58.23 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 657 | 58.23 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 658 | 58.23 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 662 | 58.23 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 730 | 58.28 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 750 | 58.29 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 761 | 58.29 | radiation | 10 | 270 | < th | dose dependent | rect. | 24 | 8 |
| 773 | 58.30 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 790 | 58.31 | radiation | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 806 | 58.32 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 811 | 58.32 | radiation | 10 | 270 | < th | dose dependent | rect. | 24 | 14 |
| 818 | 58.33 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 829 | 58.33 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 19 |
| 838 | 58.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 861 | 58.35 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 864 | 58.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 917 | 58.37 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 18 |
| 918 | 58.37 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 953 | 58.39 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 10 |
| 954 | 58.39 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 969 | 58.40 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 11 |
| 971 | 58.40 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 13 |