BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0642100 Os11g0642100|AK107010
(400 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0642100 Cyclin-like F-box domain containing protein 758 0.0
Os11g0642500 265 5e-71
Os11g0642300 265 6e-71
Os11g0538700 201 8e-52
Os11g0641900 197 1e-50
Os11g0538400 Cyclin-like F-box domain containing protein 193 2e-49
Os11g0642000 169 2e-42
Os11g0539000 Conserved hypothetical protein 130 2e-30
Os08g0330900 Cyclin-like F-box domain containing protein 82 1e-15
Os08g0332500 78 1e-14
Os04g0197800 72 7e-13
>Os11g0642100 Cyclin-like F-box domain containing protein
Length = 400
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/400 (94%), Positives = 376/400 (94%)
Query: 1 MATGDDRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAARVPCGSRY 60
MATGDDRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAARVPCGSRY
Sbjct: 1 MATGDDRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAARVPCGSRY 60
Query: 61 IGRAALIARRDXXXXXXXXXXXXXXXXDHRVTRLTVHIECDKEDKGSIASFLLSSENDER 120
IGRAALIARRD DHRVTRLTVHIECDKEDKGSIASFLLSSENDER
Sbjct: 61 IGRAALIARRDAFVRAAEAALSAAAAADHRVTRLTVHIECDKEDKGSIASFLLSSENDER 120
Query: 121 RGHRDVFDAVLSHPAARRVEELSVAAVHPHWGDKGNIVSSHGVGIYSINPANLPSNTLRV 180
RGHRDVFDAVLSHPAARRVEELSVAAVHPHWGDKGNIVSSHGVGIYSINPANLPSNTLRV
Sbjct: 121 RGHRDVFDAVLSHPAARRVEELSVAAVHPHWGDKGNIVSSHGVGIYSINPANLPSNTLRV 180
Query: 181 LDLTNCRSLAPSXXXXXXXXFPRLETLRLRHCTTNIDDLHRIIDAAPELAAVRLEFVHLI 240
LDLTNCRSLAPS FPRLETLRLRHCTTNIDDLHRIIDAAPELAAVRLEFVHLI
Sbjct: 181 LDLTNCRSLAPSAAAAAAAAFPRLETLRLRHCTTNIDDLHRIIDAAPELAAVRLEFVHLI 240
Query: 241 SNIRDVHFLVQLAMSSTTRLRFPAATALTLINCLTNGGMSGSVIDAPRLRSLTYKGAARS 300
SNIRDVHFLVQLAMSSTTRLRFPAATALTLINCLTNGGMSGSVIDAPRLRSLTYKGAARS
Sbjct: 241 SNIRDVHFLVQLAMSSTTRLRFPAATALTLINCLTNGGMSGSVIDAPRLRSLTYKGAARS 300
Query: 301 QFELTSPAPDMKMVHLHFNHYFHQRDYLRFIHNFTKVKVLKLKAEHGCPWRILPQHCSPR 360
QFELTSPAPDMKMVHLHFNHYFHQRDYLRFIHNFTKVKVLKLKAEHGCPWRILPQHCSPR
Sbjct: 301 QFELTSPAPDMKMVHLHFNHYFHQRDYLRFIHNFTKVKVLKLKAEHGCPWRILPQHCSPR 360
Query: 361 ARRRFQPLEQDGEGRRDREHAPLLPSALRPQPESHQHGVT 400
ARRRFQPLEQDGEGRRDREHAPLLPSALRPQPESHQHGVT
Sbjct: 361 ARRRFQPLEQDGEGRRDREHAPLLPSALRPQPESHQHGVT 400
>Os11g0642500
Length = 493
Score = 265 bits (676), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 183/357 (51%), Positives = 214/357 (59%), Gaps = 40/357 (11%)
Query: 1 MATGDDRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAARVPCGSRY 60
M+ GDDRLS LPD+L++R+LHFA AKEAASTSLLSR FGALWRSSGAVNLAA VP G
Sbjct: 1 MSAGDDRLSALPDDLLIRVLHFAPAKEAASTSLLSRRFGALWRSSGAVNLAACVPDGRDA 60
Query: 61 IGRAALIARRDXXXXXXXXXXXXXXXXDHRVTRLTVHIECDKEDKGSIASFLLSSENDER 120
RAA A VTRLT+H+E D E S+ N R
Sbjct: 61 FVRAAEAALAAADR---------------AVTRLTLHVEGDDE---------CSTYNSLR 96
Query: 121 RGHRDVFDAVLSHPAARRVEELSVAAVHPHWGDK-GNIVSSHGVGIYSINPANLPSNTLR 179
G DV DAV++HPAARRVEEL VAAVH D+ + V V +Y + ++LPSNTLR
Sbjct: 97 VGDHDVLDAVVAHPAARRVEELRVAAVHRGQPDEHDDAVMDDDVFLYILRFSSLPSNTLR 156
Query: 180 VLDLTNCRSLA---PSXXXXXXXXFPRLETLRLRHCTTNIDDLHRIIDAAPELAAVRLEF 236
VLDLT C + + P FPRL TLRLRHCT ++ LH I+DAAPELA V LEF
Sbjct: 157 VLDLTRCHNFSPPPPPRTASAAVAFPRLTTLRLRHCTYSVKHLHGIVDAAPELATVHLEF 216
Query: 237 VHLISNIRDVHFLVQLAMSSTTRLRFPAATALTLINCLTNGGMSGSV--IDAPRLRSLTY 294
V L+S+ R F ++ T LRFP+AT L LI+C G G I A RLRS TY
Sbjct: 217 V-LLSSDRHRRF---GPVTWNTGLRFPSATVLALIHCRGEEGAPGRSMEITALRLRSFTY 272
Query: 295 KGAARSQFELTS-PAPDMKMV---HLHFNHYFHQ-RDYLRFIHNFTKVKVLKLKAEH 346
KG A F+LTS P+PD V LHF H + DY FIHNFT KVL+LKA H
Sbjct: 273 KGEA-VLFDLTSPPSPDTTTVVAADLHFTHGMGRCVDYSHFIHNFTNAKVLRLKANH 328
>Os11g0642300
Length = 379
Score = 265 bits (676), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 190/402 (47%), Positives = 221/402 (54%), Gaps = 66/402 (16%)
Query: 1 MATGDDRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAARVPCGSRY 60
+ G DRLS LPD+L+LR+LHFANA EAASTSLLSR FGALWRSSGAVNLAARVP
Sbjct: 3 IGAGGDRLSALPDDLLLRVLHFANAVEAASTSLLSRRFGALWRSSGAVNLAARVPGAG-- 60
Query: 61 IGRAALIARRDXXXXXXXXXXXXXXXXDHRVTRLTVHIECDKEDKGSIASFLLSSENDER 120
GR A + VTRLT+H+ D G + + S N R
Sbjct: 61 -GRDAFV----------RAADAALAAAGRVVTRLTLHV-----DDGDHSGYCTSMYNLLR 104
Query: 121 RGHRDVFDAVLSHPAARRVEELSVA-AVHPHWGDKGN-IVSSHGVGIYSINPANLPSNTL 178
DV DAV+SHPAARRVEEL VA AVHP DK N ++SS V IY I A+LPS TL
Sbjct: 105 --DHDVVDAVVSHPAARRVEELRVAVAVHPFGHDKINTMISSGSVRIYDIKLASLPSKTL 162
Query: 179 RVLDLTNCRSLAPSXXXXXXXXFPRLETLRLRHCTTNIDDLHRIIDAAPELAAVRLEFVH 238
RVLDLTNCR+L P+ FP L+TLRLRHC + V+
Sbjct: 163 RVLDLTNCRNLTPASAAAAATAFPWLDTLRLRHCIS----------------------VY 200
Query: 239 LISNIRDVHFLVQLAMSSTTRLRFPAATALTLINCLTNGGMSGSVIDAPRLRSLTYKGAA 298
L+S+ + +TRLRFPAAT L LINC T G M I APRLRS TYKG A
Sbjct: 201 LVSDGHS----SDVWTVWSTRLRFPAATVLVLINCDTTGAME---IYAPRLRSFTYKGDA 253
Query: 299 RSQFELT---SPAPDMKMVHLHFNHYFHQRDYLRFIHNFT-KVKVLKLKAEHGCPWRILP 354
F+L +P PDM +V+LHF H F + DYL FIHNFT +KVLKLKA
Sbjct: 254 VQPFDLQISPAPPPDMALVNLHFTHAFCRHDYLHFIHNFTMAIKVLKLKAPAS------- 306
Query: 355 QHCSPRARRRFQP----LEQDGEGRRDREHAPLLPSALRPQP 392
+H S A R P LE DG + A + S L P
Sbjct: 307 RHLSDMAFVRVFPNIEHLELDGAYDTWNKTAAAVASILHCCP 348
>Os11g0538700
Length = 584
Score = 201 bits (511), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 163/376 (43%), Positives = 193/376 (51%), Gaps = 53/376 (14%)
Query: 1 MATGD--DRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAARVPCGS 58
MA G DR+SDLPD+L+ R+LHF AKEAASTSLLS + WRS+GAVNLA V
Sbjct: 1 MAAGAAVDRISDLPDDLLQRVLHFVPAKEAASTSLLS----SRWRSTGAVNLAVHV---- 52
Query: 59 RYIGRAALIARRDXXXXXXXXXXXXXXXXDHRVTRLTVHIECDKED---KGSIASFLLSS 115
R + RD V RLT+H+E ++ + + +FL
Sbjct: 53 RRDQEREFFSARDAFVRSAHAALAAAAG---HVRRLTMHVETERMRICMQLTADAFLHRD 109
Query: 116 ENDERRGHRDVFDAVLSHPAARRVEELSVAA--VHPHWGDKGNIVSSHGVGIYSINPANL 173
D R H DV V+SHPAARRVEEL VAA V +W V+S G + +
Sbjct: 110 PEDWERKH-DVVAGVVSHPAARRVEELRVAAAVVEAYWPSFDGEVTSSSEGEFRLCLDAQ 168
Query: 174 PSNTLRVLDLTNCRSLAPSXXXXXXXXFPRLETLRLRHCTTNIDDLHRIIDAAPELAAVR 233
PS TLRVLDL C L+ + PRL TLRLR C I DL IIDAAPELA V
Sbjct: 169 PSETLRVLDLAGCGGLSAAAAAAGVVALPRLTTLRLRLCNLQISDLQGIIDAAPELATVH 228
Query: 234 LEFVHLISNIRDVHFLVQLAMSSTTRLRFPAA-TALTLINCLTN----GGMSGSV-IDAP 287
LE V FL A RLRFPAA TAL +INC + GG G+ IDAP
Sbjct: 229 LESV----------FLAGTAEEGCVRLRFPAATTALAMINCGADCYACGGCYGATEIDAP 278
Query: 288 RLRSLTYKGAARSQFELTSPA----PDMKMV---HLHFNHYFHQRD----------YLRF 330
RLRS Y G AR +F L SPA PD +V LHF +FH +D + F
Sbjct: 279 RLRSFKYTGFAR-RFSLVSPAAAPPPDDTVVARAELHFLDHFHHKDADAADTVRANFWLF 337
Query: 331 IHNFTKVKVLKLKAEH 346
+HNF K LKLK H
Sbjct: 338 LHNFRGAKSLKLKVSH 353
>Os11g0641900
Length = 600
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 149/364 (40%), Positives = 191/364 (52%), Gaps = 27/364 (7%)
Query: 4 GDDRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAARVPCGSRYIGR 63
DDRLS L D+L+ RILHF ++EAASTSLLSR +G+LWRS+G VNLA RV
Sbjct: 3 ADDRLSVLSDDLLRRILHFVPSREAASTSLLSRRWGSLWRSTGTVNLAVRVVYDDVSGDD 62
Query: 64 AALIARRDXXXXXXXXXXXXXXXXDHRVTRLTVHIECDKEDKGSIASFLLSSENDERRGH 123
A +RRD VTRLT+++ + FL
Sbjct: 63 EAFSSRRDAFVRASQAALAAAAAGAG-VTRLTLNVA--GRCLSGVDKFLNYGGGGGGEEI 119
Query: 124 RDVFDAVLSHPAARRVEELSVAAVHPHWGDKG---------NIVSSHGVGIYSINPANLP 174
V DAV+SHPAAR VEEL V P + G S + Y+++ A+LP
Sbjct: 120 GIV-DAVVSHPAARHVEELRVGVAGPMYRTDGAEQRPWQEARRWRSDDIYTYTLSFASLP 178
Query: 175 SNTLRVLDLTNCR-SLAPSXXXXXXXXFPRLETLRLRHCTTNIDDLHRIIDAAPELAAVR 233
S TLRVLD+T C S + FPRL+TLRLR C + L R+IDAAP LA V
Sbjct: 179 SATLRVLDITECNFSDSKLALPDAGVAFPRLDTLRLRLCAVRLAHLQRLIDAAPALATVH 238
Query: 234 LEFVHLISNIRDVHFLVQ---LAMSSTTRLRFPAATALTLINC----LTNGGMSGSV-ID 285
LE V+ NI ++ V +A+ S LR PAAT L + C N + G + ID
Sbjct: 239 LESVYFEFNIYLDYYGVYGGLVAVESRLLLRCPAATELAMEFCGSSSYINSHLDGGIGID 298
Query: 286 APRLRSLTYKGAARSQFELTSPAPDMKMVHLHF---NHYFHQRDYLRFIHNFTKVKVLKL 342
AP+LRS Y G R +F L SPAP+M V++HF +H F R + RF+ NFT VK+LKL
Sbjct: 299 APKLRSFRYTGHPR-RFYLESPAPEMTAVNIHFIDGDHRFADRLW-RFLGNFTNVKILKL 356
Query: 343 KAEH 346
+
Sbjct: 357 TVQE 360
>Os11g0538400 Cyclin-like F-box domain containing protein
Length = 653
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 186/380 (48%), Gaps = 68/380 (17%)
Query: 4 GDDRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAARVPCGSRYIGR 63
G +R+SDLPD+L+ RILHFA A+EAAST LLS + +LWRS+GAVNL
Sbjct: 97 GANRISDLPDDLIQRILHFAPAREAASTGLLSSRWRSLWRSTGAVNL------------- 143
Query: 64 AALIARRD-----XXXXXXXXXXXXXXXXDHRVTRLTVHIECDKEDKGSIASFLLSSEND 118
A L+ RRD V RLT+H+E ++ A L + +
Sbjct: 144 AVLVRRRDDFFSLRDAFVRSAHAALAAAAGGHVRRLTMHVETERLPVQLTADAFLHRDAE 203
Query: 119 ERRGHRDVFDAVLSHPAARRVEELSVAAVHPHWG----------DKGNIVSSHGVGIYSI 168
+ DV V+SHPAARRVEEL VAAV G ++G S G G
Sbjct: 204 DWGRRHDVVAGVVSHPAARRVEELRVAAVRSADGPSSDREVTEMEEGEFHLSLG-GSGGT 262
Query: 169 NPANLPSNTLRVLDLTNCRSLAPSXXXXXXXXFPRLETLRLRHCTTNIDDLHRIIDAAPE 228
P+ + TLRVLDLT C ++ PRL TLRLR C ++DL ++D+AP
Sbjct: 263 QPS---TETLRVLDLTGCGGVS----LPAGAALPRLTTLRLRLCVVQVEDLQGVVDSAPA 315
Query: 229 LAAVRLEFVHLISNIRDVHFLVQLAMSSTTRLRFPAATALTLINCLTNGG---------- 278
LA V LE V L D RLRFPAATAL L C +G
Sbjct: 316 LATVHLESVFLAGTKED---------GCCARLRFPAATALVLAKCRGHGSHHNGDDDASD 366
Query: 279 MSGSV-IDAPRLRSLTYKGAARSQFELTSPAPDMKMVHLHFNHY---FHQRD-------- 326
G++ IDAPRLRS Y G R +F L SPA DM+ LHF H H RD
Sbjct: 367 CEGAMEIDAPRLRSFKYTGLPR-RFSLISPAADMERADLHFLHDDGPHHYRDTTAVLRAR 425
Query: 327 YLRFIHNFTKVKVLKLKAEH 346
+ RF+HNF VK LKLK +
Sbjct: 426 FWRFLHNFRGVKSLKLKVTY 445
>Os11g0642000
Length = 652
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 159/422 (37%), Positives = 197/422 (46%), Gaps = 84/422 (19%)
Query: 1 MATG--DDRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAV---------- 48
MA G DDRLSDLPD+L+ RILHF +EAASTSLLSR +G+LWRSSGAV
Sbjct: 1 MAAGGEDDRLSDLPDDLLRRILHFVPFREAASTSLLSRRWGSLWRSSGAVNLVEHVEDEE 60
Query: 49 ----NLAARVPCGSRYIGRAALIA-----------RRDX---XXXXXXXXXXXXXXXDHR 90
NL V + RRD DH
Sbjct: 61 EEDVNLVEHVEDEEDFDLGDEEDDDEVTAEEPSARRRDAFLRAAGAALTAADGDISCDH- 119
Query: 91 VTRLTVHIECDKEDKGSIASFLLSSENDERRGHRDVFDA------VLSHPAARRVEELS- 143
VTRL+V + D D I +FL + DE D+F V+SHPAAR VEEL
Sbjct: 120 VTRLSVDV--DGPDGYCITNFL---DCDESAAAYDIFTGMDVLHTVVSHPAARLVEELCL 174
Query: 144 -VAAVHPHWG------DKGNIVSSHGVGIYSINPANLPSNTLRVLDLTNCRSLA---PSX 193
VA+ +G DK S+ +G+Y ++ A LP LRVLD+ C +L+ P
Sbjct: 175 RVASESDSYGVHRRRRDKEEEPST-DLGVYGLSLAFLPFEKLRVLDIAGCNNLSLPPPPA 233
Query: 194 XXXXXXXFPRLETLRLRHCTTNIDDLHRIIDAAPELAAVRLEFVHLIS---NIRDVHFLV 250
FPRL+TLRLR C + L R+IDAAP LA LE V + N +
Sbjct: 234 AAAAAAAFPRLQTLRLRRCAAKVTHLQRLIDAAPGLATAHLESVVFNTDDNNDNQSYNHR 293
Query: 251 QLAMSSTTRLRFPAATALTLINCLT---------------NGGMSGSV-IDAPRLRSLTY 294
S+ LR PAAT+L L C + + GS+ IDAP+LRS Y
Sbjct: 294 DTGACSSISLRCPAATSLALEWCGSTDYKFYYAHSRYSDDDDSCGGSIAIDAPKLRSFRY 353
Query: 295 KGAARSQFELTSPAPDMKM----VHLHFN-HYFHQRDY-----LRFIHNFTKVKVLKLKA 344
KG R F L SPAP+ V LHFN Y+ + D RFI NFT K LKLK
Sbjct: 354 KGLPR-PFHLKSPAPETTTTTTAVSLHFNSDYYLKEDTARVHSWRFIGNFTNAKTLKLKV 412
Query: 345 EH 346
++
Sbjct: 413 DN 414
>Os11g0539000 Conserved hypothetical protein
Length = 495
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 131/263 (49%), Gaps = 52/263 (19%)
Query: 111 FLLSSENDERRGHR-----DVFDAVLSHPAARRVEELSVAAVHP------HWGDKGNIVS 159
+L S++ ER R DV V+SHPAARRVEEL ++A P G+ G +V
Sbjct: 25 WLRLSDDVEREADRWVKRGDVVRDVVSHPAARRVEELRISASAPAVDDDDDDGEVGRLV- 83
Query: 160 SHGVGIYSINPANLPSNTLRVLDLTNCRSLAPSXXXXXXXXFPRLETLRLRHCTTNIDDL 219
G++ ++ +PS TLRVLDL+ C L PRL TLRL+ C N++DL
Sbjct: 84 ----GVFHLDLRYVPSETLRVLDLSRCSGL----RMPPAVETPRLTTLRLQACAVNVNDL 135
Query: 220 HRIIDAAPELAAVRLEFVHLISNIRDVHFLVQLAMSSTTRLRFPAA-TALTLINCLTNG- 277
R+IDAAP LA V L+ V + RLR PAA TAL L C T+
Sbjct: 136 QRVIDAAPALATVHLDSVSFDGMEHGCY-----------RLRLPAATTALVLARCRTDAE 184
Query: 278 -----------GMSGSVIDAPRLRSLTYKGAARSQFELTSPAPDMKMVHLHFNHYFH--- 323
G S IDAP LRS Y G AR +F L SP PDM LHF H +
Sbjct: 185 PYRYRRSGRPLGTSSVEIDAPGLRSFRYAGYAR-RFSLASP-PDMARADLHFFHDMYASA 242
Query: 324 --QRD-YLRFIHNFTKVKVLKLK 343
RD + RF+ +F ++ LKLK
Sbjct: 243 STSRDLFWRFVRSFRGIRSLKLK 265
>Os08g0330900 Cyclin-like F-box domain containing protein
Length = 733
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 152/360 (42%), Gaps = 47/360 (13%)
Query: 2 ATGDDRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAARVPCGSRYI 61
A D LS LPD+++ I+ +AKE +T++LSR + LWR +G VNL Y+
Sbjct: 3 AATSDHLSGLPDDVLRHIISLLSAKEGGATAVLSRRWRPLWRQAGTVNLDTEP-----YL 57
Query: 62 GRAALIARRDXXXXXXXXXXXXXXXXDHRVTRLTVHIECDKEDKGSIASFLLSSENDERR 121
AA DH + L C+ I S L+SE E
Sbjct: 58 DPAAYRGNN-------FPEHRRSAFVDHALAALAA---CESP---RILSLRLASEEIEGG 104
Query: 122 GHR----DVFDAVLSHPAARRVEELSVAAVHPHWGDKGNIVSSHGVGIYSINPANLP--S 175
V DAV PAA RVEEL V + G+ S G + + +LP +
Sbjct: 105 AAEEKCAGVVDAVQDAPAAARVEELRVRCDVSWFCRYGSCESGSSGGTWRLQLGSLPCAA 164
Query: 176 NTLRVLDLTNCRSLAPSXXXXXXXXFPRLETLRLRHCTTNIDDLHRIIDAAPELAAVRLE 235
TLRVL + P LE +RL T + D L R+IDAAP LA + L+
Sbjct: 165 ATLRVLHANDVGVERLGDGGGVGVVLPLLEEMRLVEATVSPDTLQRVIDAAPRLANLWLD 224
Query: 236 FVHLISNIRDVHFLVQLAMSSTTRLRFPAATALTLINCLTNGGMSGSVIDAPRLRSLTYK 295
+ L SN D + LA +LR PA T L LI + S S P ++
Sbjct: 225 GIILTSN--DGSRRLYLADGFRLQLRGPALTELALIEYYSRDAASSST--RPACAPSSFP 280
Query: 296 GAARSQFELTSPAPDMKMVHLHFNHY--FHQRD----------YLRFIHNFTKVKVLKLK 343
G + LTSPAPD LHF+ + + +D LR +H V+VLKL+
Sbjct: 281 G----HYSLTSPAPDFASADLHFHDHRSYGDKDPNNLTVPLWSCLRHLHG---VRVLKLQ 333
>Os08g0332500
Length = 516
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 140/303 (46%), Gaps = 54/303 (17%)
Query: 6 DRLSDLPDELVLRILHFANAKEAASTSLLSRPFGALWRSSGAVNLAAR--VPCGSRYI-- 61
DR+S+L D+L+L IL + K+AA+T++LSR + LWR + +NL + +P + +
Sbjct: 5 DRISELSDDLLLHILSSLHTKDAAATTVLSRRWRPLWRRTCVLNLYSEPFLPTHNAFFRF 64
Query: 62 --GRAALIARRDXXXXXXXXXXXXXXXXDHRVTRLTVHIECDKEDKGSIASFLLSSENDE 119
G A + RR D + +L++ ++ S A+ + S D
Sbjct: 65 ADGALAAVLRRG---------------DDPALKKLSLAVD-------SAAARPVLSNFDS 102
Query: 120 RRGHRDVFDAVLSHPAARRVEELSVAAVH-PHWGDKGNIVSSHGVGIYSINPANLP-SNT 177
R G A+LSH AA +++L V + GD G+ +G+Y + A+LP + T
Sbjct: 103 RIG------AILSHRAAAGLQDLRVDCLPVAGAGDAGDT-----IGMYKLRLASLPCAAT 151
Query: 178 LRVLDLTNCRSLAPSXXXXXXXXFPRLETLRLRHCTTNIDD----LHRIIDAAPELAAVR 233
LRVL L C S FP L L + C ++ L I+DAAP LA +R
Sbjct: 152 LRVLHLACC--CCYSSPPSVVAAFPSLTDLAMTRCMLSLSKGGHLLQTIVDAAPRLAMLR 209
Query: 234 LEFVHLISNIRDVHFLVQLAMSSTTRLRFPAATALTLINCLTNGGMSGSVIDAPRLRSLT 293
L+ VHL+ + ++ RLR P T L L+ + +DAP L S +
Sbjct: 210 LDRVHLLISAAKTK-----EETAVLRLRCPTVTTLVLVA--VTSRIEALQLDAPSLVSFS 262
Query: 294 YKG 296
Y G
Sbjct: 263 YGG 265
>Os04g0197800
Length = 253
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 110 SFLLSSENDERRGHRDVFDAVLSHPAARRVEELSVAAVHPHWGDKGNIVSSHGVGIY--S 167
+FL D R H DV V+SHP ARRVEEL VAA+ G + S G + S
Sbjct: 96 AFLPCDPQDWERKH-DVVAGVVSHPVARRVEELRVAAIKSADGPSSDKEVSEMEGEFHLS 154
Query: 168 INPANLPSNTLRVLDLTNCRSLAPSXXXXXXXXFP--RLETLRLRHCTTNIDDLHRIIDA 225
++ + PS TLRVLDLT C S + S FP LRLR C + DL ++D+
Sbjct: 155 LSGSTQPSETLRVLDLTGCGSFSLS----AGMVFPRLTTLRLRLRLCVVQVKDLQGVVDS 210
Query: 226 APELAAVRLEFVHL 239
AP L V LE V L
Sbjct: 211 APALTTVHLESVFL 224
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,225,574
Number of extensions: 533999
Number of successful extensions: 1724
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1682
Number of HSP's successfully gapped: 13
Length of query: 400
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 297
Effective length of database: 11,657,759
Effective search space: 3462354423
Effective search space used: 3462354423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)