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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0642100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0185) R2 : 0.000205
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0119 (0.039) R2dN8 : 0.000264 R2N8 : 0.000205
σ : 0.349
deviance : 55.97
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.96 0.342 2.93 -0.278 0.105 0.122 -0.0813 -0.474 -0.123 10.1 25.06 79 -- --
53.77 0.342 2.92 -0.13 0.0984 0.1 -0.189 -- -0.0781 10 25.1 58 -- --
52.98 0.339 2.93 -0.273 0.0994 0.12 -- -0.475 -0.125 10.1 25.1 64 -- --
53.89 0.342 2.91 -0.142 0.101 0.103 -- -- -0.076 9.86 24.9 59 -- --
53.55 0.341 2.93 -0.278 -- 0.137 -- -0.474 -0.134 -- 25 54 -- --
54.21 0.345 2.9 -0.108 0.135 -- -0.222 -- -0.022 12.5 -- -- -- --
54.41 0.345 2.9 -0.116 0.136 -- -- -- -0.0232 12.2 -- -- -- --
54.48 0.344 2.92 -0.15 -- 0.113 -- -- -0.0778 -- 25.05 53 -- --
54.4 0.344 2.91 -- 0.105 0.0865 -- -- -0.0505 10.6 25.1 58 -- --
55.58 0.348 2.91 -0.121 -- -- -- -- -0.0253 -- -- -- -- --
54.77 0.346 2.9 -- 0.138 -- -- -- -0.0103 12.3 -- -- -- --
55.04 0.346 2.91 -- -- 0.102 -- -- -0.0581 -- 25.04 53 -- --
55.97 0.349 2.9 -- -- -- -- -- -0.0119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.28 wind 9.0 90 > th dose independent rect. 13 2
3 40.28 wind 9.0 90 > th dose dependent rect. 13 2
5 40.29 wind 9.0 10 > th dose independent rect. 13 1
17 40.29 wind 9.0 10 > th dose dependent rect. 13 1
47 44.44 radiation 30.0 10 > th dose independent rect. 13 1
55 45.75 radiation 20.0 10 > th dose dependent rect. 13 1
132 48.38 radiation 40.0 10 < th dose independent sin 13 NA
136 48.62 precipitation 0.1 1440 > th dose independent rect. 10 3
138 48.62 precipitation 0.1 1440 > th dose dependent rect. 10 3
139 48.64 precipitation 0.1 1440 > th dose independent rect. 12 1
141 48.64 precipitation 0.1 1440 > th dose dependent rect. 12 1
159 48.70 radiation 40.0 30 > th dose dependent sin 13 NA
163 48.84 wind 1.0 1440 > th dose independent rect. 17 1
164 48.84 wind 1.0 1440 < th dose independent rect. 17 1
168 48.96 wind 1.0 1440 < th dose dependent rect. 17 1
169 48.99 radiation 10.0 90 < th dose dependent rect. 10 2
176 49.20 wind 3.0 10 < th dose dependent rect. 12 1
209 50.31 humidity 70.0 30 < th dose independent rect. 13 1
215 50.34 wind 1.0 10 < th dose independent rect. 11 1
238 50.44 radiation 10.0 90 < th dose independent rect. 10 2
241 50.48 atmosphere 995.0 4320 > th dose independent rect. 21 1
249 50.61 wind 9.0 1440 < th dose independent rect. 21 1
250 50.61 humidity 70.0 4320 > th dose independent rect. 21 1
253 50.64 radiation 40.0 30 > th dose independent sin 13 NA
259 50.70 temperature 10.0 1440 > th dose independent rect. 21 1
262 50.70 temperature 30.0 1440 < th dose independent rect. 21 1
266 50.70 humidity 50.0 1440 > th dose independent rect. 21 1
273 50.70 radiation 1.0 1440 < th dose independent rect. 21 1
295 50.70 temperature 10.0 1440 > th dose independent rect. 22 23
313 50.71 radiation 20.0 1440 < th dose dependent rect. 21 1
318 50.72 temperature 25.0 30 > th dose independent rect. 20 1
329 50.74 wind 9.0 30 < th dose independent rect. 21 23
330 50.74 atmosphere 1005.0 30 > th dose dependent rect. 20 1
332 50.75 wind 3.0 30 > th dose independent rect. 20 1
333 50.75 humidity 80.0 30 > th dose independent rect. 20 1
334 50.75 humidity 90.0 30 < th dose independent rect. 20 1
337 50.75 temperature 20.0 30 > th dose dependent rect. 20 1
339 50.76 temperature 10.0 30 > th dose dependent rect. 20 1
342 50.76 atmosphere 995.0 30 > th dose dependent rect. 20 1
344 50.77 wind 5.0 30 < th dose independent rect. 20 1
347 50.77 atmosphere 1005.0 30 > th dose independent rect. 20 1
351 50.78 temperature 10.0 30 > th dose independent rect. 20 1
353 50.78 temperature 30.0 30 < th dose independent rect. 20 1
354 50.78 humidity 50.0 30 > th dose independent rect. 20 1
357 50.78 atmosphere 995.0 30 > th dose independent rect. 20 1
359 50.78 atmosphere 1010.0 30 < th dose independent rect. 20 1
361 50.78 radiation 1.0 30 < th dose independent rect. 20 1
366 50.78 precipitation 0.1 30 < th dose independent rect. 20 1
368 50.78 temperature 10.0 30 > th dose independent rect. 21 23
369 50.78 wind 1.0 30 > th dose dependent rect. 20 1
370 50.78 radiation 1.0 30 < th dose dependent rect. 20 1
375 50.78 precipitation 0.1 30 < th dose dependent rect. 20 1
376 50.79 humidity 50.0 30 > th dose dependent rect. 20 1
379 50.80 wind 9.0 30 < th dose dependent rect. 20 1
388 50.84 humidity 90.0 30 < th dose dependent rect. 20 1
409 50.86 atmosphere 1015.0 30 < th dose dependent rect. 20 1
420 50.91 temperature 30.0 30 < th dose dependent rect. 20 1
445 51.03 radiation 10.0 4320 < th dose dependent rect. 11 1
447 51.04 temperature 25.0 90 > th dose independent rect. 11 3
499 51.22 temperature 25.0 90 > th dose independent rect. 19 19
500 51.23 humidity 80.0 30 < th dose dependent rect. 13 1
507 51.27 atmosphere 1005.0 30 > th dose dependent rect. 13 1
542 51.37 radiation 40.0 1440 > th dose dependent rect. 15 1
562 51.42 atmosphere 1005.0 30 > th dose independent rect. 13 1
564 51.43 radiation 40.0 1440 > th dose independent rect. 15 1
586 51.44 radiation 40.0 1440 < th dose independent rect. 16 5
615 51.51 atmosphere 1010.0 30 < th dose independent rect. 11 3
646 51.61 wind 1.0 10 < th dose dependent rect. 9 4
654 51.64 radiation 40.0 30 < th dose independent rect. 12 23
660 51.66 radiation 40.0 30 < th dose independent rect. 13 7
687 51.70 wind 9.0 14400 > th dose independent rect. 1 1
689 51.70 wind 9.0 14400 > th dose dependent rect. 1 1
706 51.74 precipitation 0.1 30 < th dose independent rect. 21 23
722 51.74 precipitation 0.1 30 < th dose dependent rect. 21 23
732 51.79 temperature 25.0 30 > th dose independent rect. 13 1
734 51.79 atmosphere 995.0 30 > th dose independent rect. 21 23
737 51.80 humidity 70.0 270 > th dose independent rect. 21 12
740 51.82 humidity 60.0 10 > th dose independent rect. 11 3
741 51.82 radiation 10.0 90 < th dose independent rect. 19 17
756 51.87 humidity 50.0 10 > th dose independent rect. 20 18
763 51.89 atmosphere 1010.0 30 < th dose independent rect. 20 18
767 51.91 radiation 10.0 4320 < th dose independent rect. 11 1
818 51.96 humidity 70.0 720 > th dose independent rect. 23 10
828 51.99 humidity 70.0 720 > th dose independent rect. 7 2
865 52.03 humidity 50.0 720 > th dose dependent rect. 7 2
866 52.03 temperature 10.0 30 > th dose dependent rect. 20 18
888 52.05 radiation 40.0 270 < th dose independent rect. 9 3
894 52.07 humidity 60.0 90 > th dose independent rect. 11 3
895 52.07 radiation 40.0 1440 < th dose independent rect. 16 15
913 52.12 humidity 80.0 10 > th dose independent rect. 12 1
917 52.13 precipitation 0.1 270 > th dose independent rect. 8 1
918 52.13 precipitation 0.1 270 > th dose dependent rect. 8 1
925 52.15 wind 9.0 30 < th dose independent rect. 20 18
933 52.15 radiation 20.0 10 < th dose dependent rect. 21 23
942 52.16 humidity 50.0 720 > th dose dependent rect. 5 4
946 52.18 atmosphere 1010.0 270 < th dose independent rect. 11 1
960 52.20 temperature 25.0 90 > th dose independent rect. 10 21
962 52.20 radiation 40.0 10 < th dose dependent rect. 21 23
965 52.21 atmosphere 995.0 30 > th dose independent rect. 14 6
972 52.22 wind 7.0 720 < th dose independent rect. 2 10
981 52.23 atmosphere 1010.0 30 < th dose independent rect. 11 1
983 52.23 temperature 10.0 1440 > th dose independent rect. 15 6
988 52.23 temperature 10.0 1440 > th dose independent rect. 21 18
994 52.23 temperature 15.0 30 > th dose dependent rect. 11 3
999 52.24 temperature 25.0 90 > th dose independent rect. 11 1