BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0629400 Os11g0629400|AK099444
         (115 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0629400  Similar to Nitrilase associated protein-like         92   8e-20
Os12g0502000  Conserved hypothetical protein                       82   9e-17
Os03g0417800  Conserved hypothetical protein                       67   4e-12

>Os11g0629400 Similar to Nitrilase associated protein-like
          Length = 115

 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/42 (100%), Positives = 42/42 (100%)

Query: 61  EKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAP 102
           EKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAP
Sbjct: 61  EKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAP 102



>Os12g0502000 Conserved hypothetical protein
          Length = 101

 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 40/42 (95%)

Query: 61  EKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAP 102
           EK+KEIPAGIQS++ANNY RA+GQNCGNFLTDRPSTKV AAP
Sbjct: 43  EKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAP 84



>Os03g0417800 Conserved hypothetical protein
          Length = 148

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 61  EKMKEIPAGIQSTQANN-YFRAQGQNCGNFLTDRPSTKVHAAP 102
           +  K+IPAGIQ +++NN Y RA GQN GNFLTDRPSTKVHAAP
Sbjct: 93  DATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAP 135



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.126    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,355,156
Number of extensions: 30017
Number of successful extensions: 19
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 3
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)