BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0621000 Os11g0621000|AK106377
(309 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0621000 Protein of unknown function DUF716 family protein 456 e-129
Os09g0444800 Protein of unknown function DUF716 family protein 91 1e-18
Os08g0462800 Protein of unknown function DUF716 family protein 83 3e-16
Os09g0444900 Protein of unknown function DUF716 family protein 81 9e-16
Os08g0462900 Protein of unknown function DUF716 family protein 70 1e-12
>Os11g0621000 Protein of unknown function DUF716 family protein
Length = 309
Score = 456 bits (1173), Expect = e-129, Method: Compositional matrix adjust.
Identities = 238/309 (77%), Positives = 238/309 (77%)
Query: 1 MGSFKGHVLPGTLFLXXXXXXXXXXXXXXXXXXXXXRLRAWNPVDVGGGGAPAWLPAHLE 60
MGSFKGHVLPGTLFL RLRAWNPVDVGGGGAPAWLPAHLE
Sbjct: 1 MGSFKGHVLPGTLFLAVGAWHVWAAAARFAADPRGFRLRAWNPVDVGGGGAPAWLPAHLE 60
Query: 61 LYVIAGGAFLDMCVEVLYSTHLHIFADGGINPAHLNDLEHXXXXXXXXXXXXXXXXSQKT 120
LYVIAGGAFLDMCVEVLYSTHLHIFADGGINPAHLNDLEH SQKT
Sbjct: 61 LYVIAGGAFLDMCVEVLYSTHLHIFADGGINPAHLNDLEHGGMLLMFFLFGILALLSQKT 120
Query: 121 RYLPLPEGALCLVASTAFMAELLLFYFHSTTHQGLEGYYHYXXXXXXXXXXXXXXXXXXX 180
RYLPLPEGALCLVASTAFMAELLLFYFHSTTHQGLEGYYHY
Sbjct: 121 RYLPLPEGALCLVASTAFMAELLLFYFHSTTHQGLEGYYHYLLVVVVALCVATTVLGALL 180
Query: 181 PASFPVDIASGAAIALQGLWFYQTAFTLYGPSLPAGCRRDADGHIDCHTHAAQERAEQLA 240
PASFPVDIASGAAIALQGLWFYQTAFTLYGPSLPAGCRRDADGHIDCHTHAAQERAEQLA
Sbjct: 181 PASFPVDIASGAAIALQGLWFYQTAFTLYGPSLPAGCRRDADGHIDCHTHAAQERAEQLA 240
Query: 241 NFQLFGLVFLVCAYALGCFAVAAARHGHPDLATMHAKHVXXXXXXXXXXXXXXXDRFVGS 300
NFQLFGLVFLVCAYALGCFAVAAARHGHPDLATMHAKHV DRFVGS
Sbjct: 241 NFQLFGLVFLVCAYALGCFAVAAARHGHPDLATMHAKHVAAMEAQLAGAGAGEGDRFVGS 300
Query: 301 ALPLEDTAI 309
ALPLEDTAI
Sbjct: 301 ALPLEDTAI 309
>Os09g0444800 Protein of unknown function DUF716 family protein
Length = 315
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 96/219 (43%), Gaps = 16/219 (7%)
Query: 51 APAWLPA----HLELYVIAGGAFLDMCVEVL--YSTHLHIFADGGINPAHLNDLEHXXXX 104
APAW P +LEL +I G+ ++ +E+ +ST L ADG I L++ EH
Sbjct: 46 APAWFPVPGARYLELALIIAGSGVEFAMEMFVGHSTLLPFAADGSIPSDRLHNHEHAIIC 105
Query: 105 XXXXXXXXXXXXSQKTRYLPLPEGALCLVASTAFMAELLLFYFHSTTHQGLEGYYHYXXX 164
+ R L LVA+ F ELL+F+FHST H G+EG +H+
Sbjct: 106 LSLAVYAAAALHLDRARAPARGTLGLLLVAAV-FAQELLVFHFHSTDHAGVEGQFHWLLQ 164
Query: 165 XXXXXXXXXXXXXXXXPASFPVDIASGAAIALQGLWFYQTAFTLYGPSL-PAGC---RRD 220
P SF V +A A +A GLW ++ PSL P GC R D
Sbjct: 165 VVVAACLATSLLGVGYPRSFAVGLARSACVAFHGLWLAVIGAMVWVPSLVPRGCELVRED 224
Query: 221 ADGHIDCHTHAAQERAEQLANFQL-----FGLVFLVCAY 254
+ C + + RA+ LAN Q F VF+V Y
Sbjct: 225 GRDTVRCRSKESLHRAKALANLQFGWYLSFMTVFVVALY 263
>Os08g0462800 Protein of unknown function DUF716 family protein
Length = 315
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 106/273 (38%), Gaps = 31/273 (11%)
Query: 1 MGSFKGHVLPGTLFLXXXXXXXXXXXXXXXXXXXXXRLRAWNPVDVGGGGAPAWLPA--- 57
MG+ GHV PG FL RL P AP W P
Sbjct: 1 MGTLVGHVAPGAGFL----------LVGLWHLYNHIRLFLLRPTAY---VAPVWFPVRRA 47
Query: 58 -HLELYVIAGGAFLDMCVEVLY--STHLHIFADGGINPAHLNDLEHXXXXXXXXXXXXXX 114
+LEL ++ GA + +E++ + H ADG + HL++ EH
Sbjct: 48 RYLELALVIAGAVASILMELVVGPARHQPFDADGTVPSDHLHNFEHASISLALLVYAAAA 107
Query: 115 XXSQKTRYLPLPEGALCLVASTAFMAELLLFYFHSTTHQGLEGYYHYXXXXXXXXXXXXX 174
R +P LVA+ AF +L+LF+ HS H G+EG YH
Sbjct: 108 AALDVAR-VPHGRAVSQLVAAVAFAQQLMLFHLHSADHAGVEGQYHLLLQGVVAVTLAAT 166
Query: 175 XXXXXXPASFPVDIASGAAIALQGLWFYQTAFTLYGPS-LPAGC-RRDADGHIDCHTHA- 231
P SF V + A++ LQG+WF ++ P+ LP GC DGH A
Sbjct: 167 VLGVAAPRSFAVSLVRSASLVLQGVWFLAMGVMMWTPALLPKGCFLSREDGHDVARCRAD 226
Query: 232 ----AQERAEQLANFQ----LFGLVFLVCAYAL 256
A RA+ L N + L G V LV A L
Sbjct: 227 DGGDALARAKALVNLEFSWYLSGTVVLVVALYL 259
>Os09g0444900 Protein of unknown function DUF716 family protein
Length = 318
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 105/253 (41%), Gaps = 24/253 (9%)
Query: 1 MGSFKGHVLPGTLFLXXXXXXXXXXXXXXXXXXXXXRLRAWNPVDVGGGGAPAWLPA--- 57
MG+ GHV PG F+ RL A P AP W P
Sbjct: 1 MGTMVGHVAPGAGFI----------LIGMWQLFNHIRLFALRP---SSYAAPVWFPVRGV 47
Query: 58 -HLELYVIAGGAFLDMCVEVLY--STHLHIFADGGINPAHLNDLEHXXXXXXXXXXXXXX 114
HLEL ++ GA + + +E++ + H DG I HL++ EH
Sbjct: 48 RHLELILVIVGAAISILMELVIGPARHQPFDDDGTIPSNHLHNFEHASISLALLVYAAVT 107
Query: 115 XXSQKTRYLPLPEGALCLVASTAFMAELLLFYFHSTTHQGLEGYYHYXXXXXXXXXXXXX 174
+ R P+ + LVA+ AF +LL+F+ HS H G+EG +H+
Sbjct: 108 IHMDRARA-PMRDAVSQLVAAAAFAQQLLIFHLHSADHMGVEGQFHWLLQTVIAVTLATT 166
Query: 175 XXXXXXPASFPVDIASGAAIALQGLWFYQTAFTLYGPSL-PAGCRRD-ADGH--IDCHTH 230
P SF V + A++ QG+WF L+ P+L P GC + +GH + C T
Sbjct: 167 VLGIPCPRSFAVSLVRSASLVFQGVWFVVMGVMLWTPALIPKGCFLNLEEGHDVVRCRTD 226
Query: 231 AAQERAEQLANFQ 243
A RA+ L N Q
Sbjct: 227 EALHRAKSLVNLQ 239
>Os08g0462900 Protein of unknown function DUF716 family protein
Length = 308
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 133 VASTAFMAELLLFYFHSTTHQGLEGYYHYXXXXXXXXXXXXXXXXXXXPASFPVDIASGA 192
+A++ F EL L FHS H GLEG+YH+ P SF V + A
Sbjct: 130 LAASVFGQELFLLRFHSADHAGLEGHYHWLLQLVVTASLVSTSATVVLPRSFAVAVVRSA 189
Query: 193 AIALQGLWFYQTAFTLYGPSL-PAGCRRDADG------HIDCHTHAAQERAEQLANFQ-- 243
++ QGLWF F L+ P+L P GC G + C T A RA +AN Q
Sbjct: 190 SVLFQGLWFIVMGFALWVPALVPRGCHGAEAGGGAMRSAVACPTDEAARRAVVMANLQFS 249
Query: 244 -LFGLVFLVCAYALGCFAVAAAR 265
+ V+ V AY C V +R
Sbjct: 250 WVLAGVWAVTAYL--CLRVGGSR 270
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.141 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,295,449
Number of extensions: 341004
Number of successful extensions: 795
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 783
Number of HSP's successfully gapped: 6
Length of query: 309
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 208
Effective length of database: 11,762,187
Effective search space: 2446534896
Effective search space used: 2446534896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)