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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0444900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF716 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.13 (0.062) R2 : 0.546
β1 : -1.65 (0.227) R2dD : 0.0544 R2D : 0.0644
β2 : 2.4 (0.168) R2dC : 0.223 R2C : 0.0578
β3 : -2.11 (0.128) R2dE : 0.3 R2E : 0.172
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.12 (0.524) R2dD*E : 0.0628 R2D*E : 0.04
γ1 : 0.655 (0.133) R2dN8 : 0.0314 R2N8 : 0.0566
σ : 1.16
deviance : 618.75
__
_____
C
peak time of C : 5.17
E
wheather : radiation
threshold : 2.44
memory length : 62
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23.2
open length of G : 22.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
617.01 1.17 6.13 -1.65 2.41 -2.09 -0.88 -4.03 0.644 5.26 2.43 63 23.2 22.4
688.9 1.22 6.14 -1.56 2.5 -2.15 -1.82 -- 0.603 4.79 2.21 64 23.1 22.6
618.75 1.16 6.13 -1.65 2.4 -2.11 -- -4.12 0.655 5.17 2.44 62 23.2 22.4
703.19 1.24 6.12 -1.64 2.36 -2.15 -- -- 0.667 5.09 2.215 62 23.2 22.4
879.01 1.38 6.18 -1.56 -- -1.63 -- -3.62 0.662 -- 3.28 47 23.4 22.6
833.76 1.35 6.04 -1.74 2.48 -- 2.28 -- 0.857 8.79 -- -- -- --
848.74 1.36 6.04 -1.67 2.5 -- -- -- 0.852 8.48 -- -- -- --
875.89 1.38 6.14 -1.56 -- -1.7 -- -- 0.719 -- 4.62 14 23.1 23.3
774.98 1.3 6.11 -- 2.3 -2.15 -- -- 0.761 5.09 2.71 60 23.2 22.4
1199.55 1.62 6.1 -1.66 -- -- -- -- 0.877 -- -- -- -- --
922.17 1.42 5.99 -- 2.5 -- -- -- 1.04 8.53 -- -- -- --
940.27 1.43 6.1 -- -- -1.72 -- -- 0.891 -- 4.62 14 23.1 23.3
1272.04 1.66 6.06 -- -- -- -- -- 1.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 636.02 radiation 10 30 < th dose dependent rect. 23 23
3 642.71 radiation 1 90 < th dose independent rect. 23 22
4 646.17 humidity 90 90 > th dose dependent rect. 1 4
5 650.36 temperature 10 30 > th dose dependent rect. 5 22
8 651.90 radiation 10 30 < th dose dependent sin 4 NA
9 652.03 humidity 90 10 > th dose dependent rect. 24 18
11 652.43 temperature 10 90 > th dose dependent rect. 5 20
12 652.48 humidity 90 10 > th dose dependent rect. 24 14
16 652.51 radiation 10 10 < th dose dependent rect. 7 23
18 652.93 humidity 90 10 > th dose dependent rect. 24 12
20 653.22 humidity 90 10 > th dose dependent rect. 24 10
25 654.15 humidity 90 10 > th dose dependent sin 7 NA
36 656.09 radiation 10 30 < th dose dependent rect. 3 23
49 657.45 temperature 10 10 > th dose dependent rect. 6 18
58 658.82 humidity 90 90 > th dose dependent rect. 7 22
67 659.53 radiation 1 90 < th dose independent sin 4 NA
94 662.02 humidity 90 270 > th dose dependent rect. 1 1
99 662.09 radiation 1 90 < th dose independent rect. 23 20
100 662.17 radiation 10 30 < th dose dependent rect. 11 23
101 662.18 radiation 1 90 > th dose independent sin 3 NA
102 662.23 radiation 10 30 < th dose dependent no NA NA
105 662.30 radiation 10 30 < th dose dependent rect. 13 23
106 662.38 radiation 10 30 < th dose dependent rect. 15 23
111 663.18 radiation 10 10 < th dose dependent rect. 10 20
153 666.13 humidity 90 90 > th dose independent rect. 1 4
156 666.16 humidity 90 270 > th dose independent rect. 1 1
163 666.62 radiation 1 30 > th dose independent rect. 17 23
178 667.70 temperature 25 30 < th dose independent sin 7 NA
190 668.36 radiation 1 90 < th dose dependent rect. 23 20
209 669.36 humidity 90 90 > th dose dependent rect. 10 19
223 670.07 radiation 10 30 < th dose dependent rect. 3 11
227 670.11 humidity 90 90 > th dose dependent rect. 13 16
270 672.28 temperature 25 10 < th dose independent rect. 3 3
275 672.31 temperature 15 30 > th dose dependent rect. 5 11
312 674.49 humidity 90 30 > th dose dependent rect. 3 23
313 674.54 humidity 90 90 > th dose dependent rect. 19 10
324 675.17 humidity 90 10 > th dose dependent rect. 3 15
331 675.56 humidity 90 30 > th dose dependent rect. 20 22
333 675.63 humidity 90 10 > th dose dependent rect. 3 11
348 676.00 radiation 10 10 < th dose dependent rect. 1 23
356 676.14 humidity 90 10 > th dose dependent rect. 3 9
366 676.30 radiation 10 30 < th dose dependent rect. 3 14
374 676.56 humidity 90 10 > th dose dependent rect. 3 7
384 676.94 temperature 25 10 < th dose independent rect. 3 11
385 676.97 humidity 90 30 > th dose dependent no NA NA
386 676.97 humidity 90 30 > th dose dependent rect. 11 23
387 676.97 humidity 90 30 > th dose dependent rect. 13 23
388 676.97 humidity 90 30 > th dose dependent rect. 15 23
389 676.97 humidity 90 30 > th dose dependent rect. 17 23
392 677.04 humidity 90 30 > th dose dependent rect. 17 21
407 677.27 humidity 90 30 > th dose dependent rect. 13 21
422 677.49 temperature 25 90 < th dose independent rect. 1 4
427 677.70 atmosphere 1005 270 > th dose independent rect. 24 4
438 677.78 humidity 90 30 > th dose dependent rect. 17 19
443 677.86 humidity 90 10 > th dose dependent rect. 22 16
447 677.88 radiation 1 30 > th dose independent rect. 15 23
461 678.09 humidity 90 30 > th dose dependent rect. 17 17
508 678.54 humidity 90 30 > th dose dependent rect. 20 18
517 678.65 radiation 1 90 < th dose independent rect. 1 18
518 678.68 radiation 1 90 < th dose dependent rect. 1 18
525 678.76 radiation 1 90 > th dose independent rect. 4 12
574 679.31 temperature 25 10 < th dose independent rect. 3 7
725 680.94 temperature 25 10 < th dose independent rect. 3 9
729 681.02 atmosphere 1005 270 > th dose independent rect. 23 6
734 681.09 humidity 90 10 < th dose independent rect. 4 12
735 681.10 humidity 90 10 < th dose independent sin 3 NA
814 682.25 humidity 70 720 > th dose independent rect. 19 12
839 682.77 radiation 1 90 < th dose independent rect. 1 16
842 682.78 temperature 25 90 < th dose independent rect. 3 2
861 683.09 humidity 90 10 > th dose independent rect. 3 6
870 683.24 temperature 25 10 < th dose independent rect. 3 17
872 683.32 wind 9 90 < th dose dependent rect. 5 11
892 683.65 wind 7 720 < th dose dependent rect. 5 2
897 683.83 radiation 1 90 < th dose dependent rect. 3 16
915 684.20 radiation 1 90 < th dose independent rect. 1 7
922 684.26 radiation 1 90 < th dose independent rect. 1 11
945 684.80 radiation 1 720 > th dose independent rect. 4 3
964 684.92 humidity 90 10 < th dose independent rect. 2 14
973 685.04 humidity 90 10 > th dose independent rect. 3 9
976 685.22 radiation 10 30 < th dose dependent rect. 24 15
995 685.40 humidity 70 720 > th dose independent rect. 19 4