BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0444900 Os09g0444900|AK061210
(318 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0444900 Protein of unknown function DUF716 family protein 480 e-136
Os08g0462800 Protein of unknown function DUF716 family protein 350 6e-97
Os09g0444800 Protein of unknown function DUF716 family protein 281 4e-76
Os08g0462900 Protein of unknown function DUF716 family protein 143 1e-34
Os11g0621000 Protein of unknown function DUF716 family protein 98 8e-21
>Os09g0444900 Protein of unknown function DUF716 family protein
Length = 318
Score = 480 bits (1235), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/318 (79%), Positives = 252/318 (79%)
Query: 1 MGTMVGHVAPGAGFILIGMWQLFNHIRLFALRPSSYAAPVWFPVRGVRHLELILVIVGAA 60
MGTMVGHVAPGAGFILIGMWQLFNHIRLFALRPSSYAAPVWFPVRGVRHLELILVIVGAA
Sbjct: 1 MGTMVGHVAPGAGFILIGMWQLFNHIRLFALRPSSYAAPVWFPVRGVRHLELILVIVGAA 60
Query: 61 ISILMELVIGPARHQPFDDDGTIPSNHLHNFEHASISLALLVYAAVTIHMDRARAPMRDX 120
ISILMELVIGPARHQPFDDDGTIPSNHLHNFEHASISLALLVYAAVTIHMDRARAPMRD
Sbjct: 61 ISILMELVIGPARHQPFDDDGTIPSNHLHNFEHASISLALLVYAAVTIHMDRARAPMRDA 120
Query: 121 XXXXXXXXXXXXXXXIFHLHSADHMGVEGQFHWXXXXXXXXXXXXXXXGIPCPRSFAVSL 180
IFHLHSADHMGVEGQFHW GIPCPRSFAVSL
Sbjct: 121 VSQLVAAAAFAQQLLIFHLHSADHMGVEGQFHWLLQTVIAVTLATTVLGIPCPRSFAVSL 180
Query: 181 VRSASLVFQGVWFVVMGVMLWTPALIPKGCFLNLEEGHDVVRCRTDEALHRAKSLVNLQF 240
VRSASLVFQGVWFVVMGVMLWTPALIPKGCFLNLEEGHDVVRCRTDEALHRAKSLVNLQF
Sbjct: 181 VRSASLVFQGVWFVVMGVMLWTPALIPKGCFLNLEEGHDVVRCRTDEALHRAKSLVNLQF 240
Query: 241 SWYLTATVVFVVVFYLHLTKLYPEEPRYLPLVKXXXXXXXXXXXXXXXXXXXXEDDLEXX 300
SWYLTATVVFVVVFYLHLTKLYPEEPRYLPLVK EDDLE
Sbjct: 241 SWYLTATVVFVVVFYLHLTKLYPEEPRYLPLVKGGGGGGDGDSDGGRFSIGDDEDDLEAA 300
Query: 301 XXXXXXXXXXXXXVEIER 318
VEIER
Sbjct: 301 KGGFGHVAGGGNAVEIER 318
>Os08g0462800 Protein of unknown function DUF716 family protein
Length = 315
Score = 350 bits (899), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 180/276 (65%), Positives = 207/276 (75%), Gaps = 3/276 (1%)
Query: 1 MGTMVGHVAPGAGFILIGMWQLFNHIRLFALRPSSYAAPVWFPVRGVRHLELILVIVGAA 60
MGT+VGHVAPGAGF+L+G+W L+NHIRLF LRP++Y APVWFPVR R+LEL LVI GA
Sbjct: 1 MGTLVGHVAPGAGFLLVGLWHLYNHIRLFLLRPTAYVAPVWFPVRRARYLELALVIAGAV 60
Query: 61 ISILMELVIGPARHQPFDDDGTIPSNHLHNFEHASISLALLVYAAVTIHMDRARAPMRDX 120
SILMELV+GPARHQPFD DGT+PS+HLHNFEHASISLALLVYAA +D AR P
Sbjct: 61 ASILMELVVGPARHQPFDADGTVPSDHLHNFEHASISLALLVYAAAAAALDVARVPHGRA 120
Query: 121 XXXXXXXXXXXXXXXIFHLHSADHMGVEGQFHWXXXXXXXXXXXXXXXGIPCPRSFAVSL 180
+FHLHSADH GVEGQ+H G+ PRSFAVSL
Sbjct: 121 VSQLVAAVAFAQQLMLFHLHSADHAGVEGQYHLLLQGVVAVTLAATVLGVAAPRSFAVSL 180
Query: 181 VRSASLVFQGVWFVVMGVMLWTPALIPKGCFLNLEEGHDVVRCRTD---EALHRAKSLVN 237
VRSASLV QGVWF+ MGVM+WTPAL+PKGCFL+ E+GHDV RCR D +AL RAK+LVN
Sbjct: 181 VRSASLVLQGVWFLAMGVMMWTPALLPKGCFLSREDGHDVARCRADDGGDALARAKALVN 240
Query: 238 LQFSWYLTATVVFVVVFYLHLTKLYPEEPRYLPLVK 273
L+FSWYL+ TVV VV YL L +LYPEEPRY+PLV+
Sbjct: 241 LEFSWYLSGTVVLVVALYLRLCRLYPEEPRYMPLVR 276
>Os09g0444800 Protein of unknown function DUF716 family protein
Length = 315
Score = 281 bits (720), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 128/258 (49%), Positives = 167/258 (64%)
Query: 3 TMVGHVAPGAGFILIGMWQLFNHIRLFALRPSSYAAPVWFPVRGVRHLELILVIVGAAIS 62
+ +GH+ PGAGF+ +G+W LFNH++LF+ RP +Y AP WFPV G R+LEL L+I G+ +
Sbjct: 11 SSIGHILPGAGFVAVGVWHLFNHVKLFSQRPDTYVAPAWFPVPGARYLELALIIAGSGVE 70
Query: 63 ILMELVIGPARHQPFDDDGTIPSNHLHNFEHASISLALLVYAAVTIHMDRARAPMRDXXX 122
ME+ +G + PF DG+IPS+ LHN EHA I L+L VYAA +H+DRARAP R
Sbjct: 71 FAMEMFVGHSTLLPFAADGSIPSDRLHNHEHAIICLSLAVYAAAALHLDRARAPARGTLG 130
Query: 123 XXXXXXXXXXXXXIFHLHSADHMGVEGQFHWXXXXXXXXXXXXXXXGIPCPRSFAVSLVR 182
+FH HS DH GVEGQFHW G+ PRSFAV L R
Sbjct: 131 LLLVAAVFAQELLVFHFHSTDHAGVEGQFHWLLQVVVAACLATSLLGVGYPRSFAVGLAR 190
Query: 183 SASLVFQGVWFVVMGVMLWTPALIPKGCFLNLEEGHDVVRCRTDEALHRAKSLVNLQFSW 242
SA + F G+W V+G M+W P+L+P+GC L E+G D VRCR+ E+LHRAK+L NLQF W
Sbjct: 191 SACVAFHGLWLAVIGAMVWVPSLVPRGCELVREDGRDTVRCRSKESLHRAKALANLQFGW 250
Query: 243 YLTATVVFVVVFYLHLTK 260
YL+ VFVV YL+++
Sbjct: 251 YLSFMTVFVVALYLYVSN 268
>Os08g0462900 Protein of unknown function DUF716 family protein
Length = 308
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 142/268 (52%), Gaps = 14/268 (5%)
Query: 1 MGTMVGHVAPGAGFILIGMWQLFNHIRLFALRPSS-YAAPVWFP----VRGVRHLELILV 55
MGT +GH PG F ++G+W N +R + L+ +S + A WFP V G++HLEL L+
Sbjct: 1 MGTFLGHFVPGLAFAILGLWHALNTVRAYKLKGASGFRAAAWFPFPSPVPGLKHLELYLL 60
Query: 56 IVGAAISILMELVIGPARHQPFDDDGTI-PSNHLHNFEHASISLALLVYAAVTIHMDRAR 114
+ + ++I+ +LV P D + +LH +AS++LA AA + H A+
Sbjct: 61 LSFSVLAIVDQLVDFPLLSFTIQPDALEHATMYLHLAVYASVALAADGVAASSSHHGGAQ 120
Query: 115 APMRDXXXXXXXXXXXXXXXXIFHLHSADHMGVEGQFHWXXXXXXXXXXXXXXXGIPCPR 174
A + + + HSADH G+EG +HW + PR
Sbjct: 121 AQLGEVVAALAASVFGQELF-LLRFHSADHAGLEGHYHWLLQLVVTASLVSTSATVVLPR 179
Query: 175 SFAVSLVRSASLVFQGVWFVVMGVMLWTPALIPKGCFLNLEEGHDVVR----CRTDEALH 230
SFAV++VRSAS++FQG+WF+VMG LW PAL+P+GC E G +R C TDEA
Sbjct: 180 SFAVAVVRSASVLFQGLWFIVMGFALWVPALVPRGCH-GAEAGGGAMRSAVACPTDEAAR 238
Query: 231 RAKSLVNLQFSWYLTATVVFVVVFYLHL 258
RA + NLQFSW L V+ V YL L
Sbjct: 239 RAVVMANLQFSWVLAG--VWAVTAYLCL 264
>Os11g0621000 Protein of unknown function DUF716 family protein
Length = 309
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 114/269 (42%), Gaps = 29/269 (10%)
Query: 1 MGTMVGHVAPGAGFILIGMWQLF----------NHIRLFALRP---SSYAAPVWFPVRGV 47
MG+ GHV PG F+ +G W ++ RL A P AP W P
Sbjct: 1 MGSFKGHVLPGTLFLAVGAWHVWAAAARFAADPRGFRLRAWNPVDVGGGGAPAWLPA--- 57
Query: 48 RHLELILVIVGAAISILMELVIGPARHQPFDDDGTIPSNHLHNFEHASISLALLVYAAVT 107
HLEL ++ GA + + +E++ + H DG I HL++ EH + L ++ +
Sbjct: 58 -HLELYVIAGGAFLDMCVEVLY--STHLHIFADGGINPAHLNDLEHGGMLLMFFLFGILA 114
Query: 108 IHMDRARA-PMRDXXXXXXXXXXXXXXXXIFHLHSADHMGVEGQFHWXXXXXXXXXXXXX 166
+ + R P+ + +F+ HS H G+EG +H+
Sbjct: 115 LLSQKTRYLPLPEGALCLVASTAFMAELLLFYFHSTTHQGLEGYYHYLLVVVVALCVATT 174
Query: 167 XXGIPCPRSFAVSLVRSASLVFQGVWFVVMGVMLWTPALIPKGCFLNLEEGHDVVRCRTD 226
G P SF V + A++ QG+WF L+ P+L P GC + +GH + C T
Sbjct: 175 VLGALLPASFPVDIASGAAIALQGLWFYQTAFTLYGPSL-PAGCRRD-ADGH--IDCHTH 230
Query: 227 EALHRAKSLVNLQFSWYLTATVVFVVVFY 255
A RA+ L N Q +VF+V Y
Sbjct: 231 AAQERAEQLANFQLF-----GLVFLVCAY 254
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.142 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,850,397
Number of extensions: 319362
Number of successful extensions: 671
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 5
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)