Os11g0621000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF716 family protein.
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Os11g0621000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF716 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.08 | 0.423 | 9.14 | 1.57 | 0.979 | 3.53 | -1.17 | 6.52 | 1.05 | 12.7 | 0.7429 | 1433 | -- | -- |
| 94.67 | 0.453 | 9.02 | 2.22 | 0.944 | 2.23 | -1.32 | -- | 1.2 | 12.2 | 2.447 | 1417 | -- | -- |
| 84.47 | 0.428 | 9.16 | 1.49 | 1.09 | 3.78 | -- | 7.31 | 1.02 | 12.8 | 0.4397 | 1448 | -- | -- |
| 98.51 | 0.462 | 9.02 | 2.24 | 0.882 | 2.11 | -- | -- | 1.21 | 12.8 | 2.524 | 1413 | -- | -- |
| 123.93 | 0.518 | 9.17 | 1.35 | -- | 3.84 | -- | 7.32 | 1.06 | -- | 0.4849 | 2802 | -- | -- |
| 149.88 | 0.574 | 9.1 | 1.7 | 1.07 | -- | -0.759 | -- | 0.861 | 12.8 | -- | -- | -- | -- |
| 152.22 | 0.578 | 9.11 | 1.67 | 1.08 | -- | -- | -- | 0.858 | 13 | -- | -- | -- | -- |
| 124.16 | 0.519 | 9.03 | 2.48 | -- | 2.64 | -- | -- | 1.35 | -- | 2.401 | 2755 | -- | -- |
| 200.47 | 0.659 | 9.12 | -- | 0.79 | 1.08 | -- | -- | 0.84 | 12.3 | 8.792 | 1394 | -- | -- |
| 224.52 | 0.7 | 9.12 | 1.63 | -- | -- | -- | -- | 0.837 | -- | -- | -- | -- | -- |
| 225.74 | 0.703 | 9.15 | -- | 1.05 | -- | -- | -- | 0.672 | 12.9 | -- | -- | -- | -- |
| 218.95 | 0.689 | 9.06 | -- | -- | 1.68 | -- | -- | 1.16 | -- | 9.001 | 9833 | -- | -- |
| 294.6 | 0.801 | 9.17 | -- | -- | -- | -- | -- | 0.657 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.40 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 2 | 72.46 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 5 | 73.26 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 8 | 73.66 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 37 | 75.07 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 57 | 75.54 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 64 | 75.84 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 70 | 75.95 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 71 | 75.98 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 73 | 75.98 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 81 | 76.05 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 103 | 76.27 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 8 |
| 107 | 76.28 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 11 |
| 109 | 76.29 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 125 | 76.35 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 128 | 76.37 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 142 | 76.45 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 164 | 76.54 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 177 | 76.57 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 179 | 76.62 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 217 | 76.87 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 230 | 76.95 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 231 | 76.95 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 5 |
| 268 | 77.09 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 283 | 77.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 304 | 77.24 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 305 | 77.24 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 13 |
| 306 | 77.24 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 17 |
| 307 | 77.24 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 19 |
| 350 | 77.30 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 351 | 77.31 | radiation | 1.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 354 | 77.32 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 359 | 77.35 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 417 | 77.43 | humidity | 90.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 420 | 77.43 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 16 |
| 421 | 77.44 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 432 | 77.44 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 14 |
| 437 | 77.44 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 19 |
| 440 | 77.45 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 472 | 77.48 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 14 |
| 475 | 77.49 | radiation | 1.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 590 | 77.64 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 593 | 77.65 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 605 | 77.68 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 609 | 77.70 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 689 | 77.81 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 699 | 77.81 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 769 | 77.93 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 782 | 77.95 | humidity | 90.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 832 | 78.12 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 835 | 78.13 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 836 | 78.13 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 847 | 78.16 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 886 | 78.25 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 20 | NA |
| 894 | 78.27 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 932 | 78.35 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 962 | 78.40 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 969 | 78.43 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 974 | 78.44 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 979 | 78.45 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 988 | 78.46 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 19 |