BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0621000 Os11g0621000|AK106377
(309 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32120.1 | chr1:11552926-11558608 FORWARD LENGTH=1207 234 6e-62
AT1G55240.1 | chr1:20605015-20606185 FORWARD LENGTH=312 96 2e-20
AT1G55230.1 | chr1:20602895-20603797 FORWARD LENGTH=301 96 3e-20
AT5G19870.1 | chr5:6716182-6717012 REVERSE LENGTH=277 77 1e-14
AT1G49470.1 | chr1:18310554-18311462 FORWARD LENGTH=303 74 1e-13
>AT1G32120.1 | chr1:11552926-11558608 FORWARD LENGTH=1207
Length = 1206
Score = 234 bits (596), Expect = 6e-62, Method: Composition-based stats.
Identities = 122/269 (45%), Positives = 154/269 (57%), Gaps = 10/269 (3%)
Query: 1 MGSFKGHVLPGTLFLXXXXXXXXXXXXXXXXXXXXXRLRAWNPVDVGGGGAPAWLP--AH 58
MGSFKGH LPGTLFL R+R W+PV P + +
Sbjct: 943 MGSFKGHALPGTLFLVVGVWHIWSSVVRYISNPSSFRVRVWHPV-------PGFNDRIKY 995
Query: 59 LELYVIAGGAFLDMCVEVLYSTHLHIFADGGINPAHLNDLEHXXXXXXXXXXXXXXXXSQ 118
LELYV+ G+F+D+C+E LYSTHL F +G +NP+H+ND EH S+
Sbjct: 996 LELYVVTIGSFIDLCIEFLYSTHLKFFVNGVLNPSHMNDFEHSGMLLMFFILGFIALLSE 1055
Query: 119 KTRYLPLPEGALCLVASTAFMAELLLFYFHSTTHQGLEGYYHYXXXXXXXXXXXXXXXXX 178
KTR LPLP+ ALCL+A+TAF AE LLF+FHST+H+GLEGYYH
Sbjct: 1056 KTRLLPLPQEALCLIAATAFTAECLLFFFHSTSHKGLEGYYHLLLVFLIGLCVISSIAGA 1115
Query: 179 XXPASFPVDIASGAAIALQGLWFYQTAFTLYGPSLPAGCRRDADGHIDCHTHAAQERAEQ 238
P SFPVD+ +G A+ LQGLWFYQTAFTLYGP +P GC + + C + ++ E
Sbjct: 1116 ICPTSFPVDLCNGIAMTLQGLWFYQTAFTLYGPMMPQGCSLKQNSVV-CRSVDSEVSGEF 1174
Query: 239 LANFQLFGLVFLVCAYALGCFAVAAARHG 267
LANFQLF LV V +G + AA+R G
Sbjct: 1175 LANFQLFSLVLAVLVCVVGSYVFAASRFG 1203
>AT1G55240.1 | chr1:20605015-20606185 FORWARD LENGTH=312
Length = 311
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 96/250 (38%), Gaps = 16/250 (6%)
Query: 1 MGSFKGHVLPGTLFLXXXXXXXXXXXXXXXXXXXXXRLRAWNPVDVGGGGAPAWLPAHLE 60
MGSF GHVLPG F+ W P+ HLE
Sbjct: 1 MGSFLGHVLPGFAFVALGLWHLFNNIKLFCLHPNTFSSSTWFPISK---------LRHLE 51
Query: 61 LYVIAGGAFLDMCVEVLYSTHLH--IFADGGINPAHLNDLEHXXXXXXXXXXXXXXXXSQ 118
LY+I + + +E+ H DG I HL++ EH
Sbjct: 52 LYLIMLSSTASISMELFIGPRRHHPFDVDGTIPSNHLHNFEHSSISMSFLVYAVLALVLD 111
Query: 119 KTR-YLPLPEGALCLVASTAFMAELLLFYFHSTTHQGLEGYYHYXXXXXXXXXXXXXXXX 177
+ R EG L A+ AF +LLLF+FHST H G+EG YH
Sbjct: 112 RARPRAAASEGLTMLAAAAAFSQQLLLFHFHSTDHMGVEGQYHVILQVVIFVSLLTTIMG 171
Query: 178 XXXPASFPVDIASGAAIALQGLWFYQTAFTLYGPSL-PAGCRRDADGH---IDCHTHAAQ 233
P SF V + ++IA QG+W LY PSL P GC +G + C T A
Sbjct: 172 IFLPKSFLVSLVRSSSIAFQGVWLIVIGCMLYTPSLIPKGCYIHDEGRHIIVKCSTEEAL 231
Query: 234 ERAEQLANFQ 243
RA+ L N +
Sbjct: 232 HRAKSLVNLE 241
>AT1G55230.1 | chr1:20602895-20603797 FORWARD LENGTH=301
Length = 300
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 108/278 (38%), Gaps = 24/278 (8%)
Query: 1 MGSFKGHVLPGTLFLXXXXXXXXXXXXXXXXXXXXXRLRAWNPVDVGGGGAPAWLPA--- 57
MG+ GHV PG F +L NP + W P
Sbjct: 1 MGTLVGHVAPGFAFF----------ALGLWHLFNNIKLFCLNP---NTFTSSPWFPTSKL 47
Query: 58 -HLELYVIAGGAFLDMCVEVLY--STHLHIFADGGINPAHLNDLEHXXXXXXXXX-XXXX 113
HLELY+I + + + E+ H +DG I HL++ EH
Sbjct: 48 RHLELYIIMVCSSISIASELFIGPKKHQPFDSDGTIPSNHLHNFEHSSISMSFLVYAIFA 107
Query: 114 XXXSQKTRYLPLPEGALCLVASTAFMAELLLFYFHSTTHQGLEGYYHYXXXXXXXXXXXX 173
Q+ R + G LVAS+AF +L LF+ HS H G+EG YH
Sbjct: 108 VVLDQERRRSNISHGLTMLVASSAFAQQLFLFHLHSADHMGIEGQYHKLLQLIIFVSFLT 167
Query: 174 XXXXXXXPASFPVDIASGAAIALQGLWFYQTAFTLYGPSL-PAGC-RRDADGH--IDCHT 229
P SF V ++I QG+WF + L+ PSL P GC + +GH I C +
Sbjct: 168 TLIGITLPKSFLVSFVRSSSITFQGVWFVVMGYMLWTPSLIPKGCFLHEEEGHQVIKCSS 227
Query: 230 HAAQERAEQLANFQLFGLVFLVCAYALGCFAVAAARHG 267
A RA+ L N + + + + F + + +G
Sbjct: 228 DKAIHRAKSLVNIEFSWFFVGITIFVMSLFLILSGLYG 265
>AT5G19870.1 | chr5:6716182-6717012 REVERSE LENGTH=277
Length = 276
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 103/275 (37%), Gaps = 19/275 (6%)
Query: 1 MGSFKGHVLPGTLFLXXXXXXXXXXXXXXXXXXXXXRLRAWNPVDVGGGGAPAWLPAHLE 60
MG+ GH+LPG F W P+ P +LE
Sbjct: 1 MGTLVGHILPGFFFFALGLWHLFNHIKIFSLHPKSYIAPLWFPLSK---------PRYLE 51
Query: 61 LYVIAGGAFLDMCVEVLYSTHLHI---FADGGINPAHLNDLEHXXXXXXXXXXXXXXXXS 117
VI + L + VE+ H DG I HL++ EH
Sbjct: 52 PLVIIIASSLSISVELFLGQKNHQPFDPNDGTIPSNHLHNFEHSCISFTFITYAAFAIVF 111
Query: 118 QKTRYLPLPEGALC-LVASTAFMAELLLFYFHSTTHQGLEGYYHYXXXXXXXXXXXXXXX 176
KTR P+ +L L+A+ AF +L LF+FHS+ H G+EG+YH
Sbjct: 112 DKTR--PIAHRSLINLIAALAFAQQLFLFHFHSSDHTGVEGHYHLLLQLVVFVSLVTTLL 169
Query: 177 XXXXPASFPVDIASGAAIALQGLWFYQTAFTLYGPSL-PAGC---RRDADGHIDCHTHAA 232
P+SF + +++ QG+W A L+ PSL P C + I C A
Sbjct: 170 GIALPSSFILSFVRSLSVSFQGIWLMSMACMLWTPSLVPKDCFLHIEEGKHTIRCSDVKA 229
Query: 233 QERAEQLANFQLFGLVFLVCAYALGCFAVAAARHG 267
RA L N Q + ++ +A+ + +G
Sbjct: 230 LHRAISLVNIQFSWFLVIITIFAMWFYIFLQRIYG 264
>AT1G49470.1 | chr1:18310554-18311462 FORWARD LENGTH=303
Length = 302
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 104/278 (37%), Gaps = 40/278 (14%)
Query: 1 MGSFKGHVLPGTLFLXXXXXXXXXXXXXXXXXXXXXRLRAWNPVDVGGGGAPAWLP---- 56
MG+F GH +PG +R++ A W P
Sbjct: 1 MGTFLGHFVPG------------LSLALLGLWHLFNTIRSYCLKGPEAFSAKFWFPFPKL 48
Query: 57 AHLELYVIAGGAFLDMCVEVLYSTHLHIFADGGINPAHLNDLEHXXXXXXXXXXXXXXXX 116
HLEL +I +FL + L + F + P ++LEH
Sbjct: 49 KHLELILILFFSFLSI---TLLTLDFPNFNFSSLKP---DNLEHASMFLHLIIFACFALF 102
Query: 117 SQKTRYLPLPEGALCLVASTAFMAELLLFYFHSTTHQGLEGYYHYXXXXXXXXXXXXXXX 176
+ T L G + +++++ F EL L +FHST H GLEG+YH+
Sbjct: 103 CELTLCSDLFSGLIGVLSASVFAQELFLLHFHSTDHSGLEGHYHFLLQLIAFVSFSSALA 162
Query: 177 XXXXPASFPVDIASGAAIALQGLWFYQTAFTLYGPS-LPAGC-----------RRDA--D 222
P SF + ++ QG WF F L+ P +P GC RR
Sbjct: 163 SASFPKSFSAALFLPISVMFQGCWFLNMGFMLWIPEYVPRGCVSNMSTSTDNNRRSVYHS 222
Query: 223 GHIDCHTHAAQERAEQLANFQ----LFGLVFLVCAYAL 256
G + C + A+ RA+ LAN Q L ++ + CA L
Sbjct: 223 GAVACESPGAEIRAKALANLQFSWMLSAILIITCALCL 260
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.141 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,357,406
Number of extensions: 178530
Number of successful extensions: 334
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 5
Length of query: 309
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 211
Effective length of database: 8,419,801
Effective search space: 1776578011
Effective search space used: 1776578011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)