BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0618200 Os11g0618200|J065152J16
(52 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0618200 Conserved hypothetical protein 107 2e-24
Os07g0674900 107 3e-24
Os10g0118700 Zinc finger, BED-type predicted domain contain... 105 7e-24
Os01g0170400 HAT dimerisation domain containing protein 75 1e-14
>Os11g0618200 Conserved hypothetical protein
Length = 52
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/52 (100%), Positives = 52/52 (100%)
Query: 1 PPRMVERLVCANDWLRGGNYVSVEEDSEQMALLEEELGDLSISKEDTPAATQ 52
PPRMVERLVCANDWLRGGNYVSVEEDSEQMALLEEELGDLSISKEDTPAATQ
Sbjct: 1 PPRMVERLVCANDWLRGGNYVSVEEDSEQMALLEEELGDLSISKEDTPAATQ 52
>Os07g0674900
Length = 694
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/51 (100%), Positives = 51/51 (100%)
Query: 2 PRMVERLVCANDWLRGGNYVSVEEDSEQMALLEEELGDLSISKEDTPAATQ 52
PRMVERLVCANDWLRGGNYVSVEEDSEQMALLEEELGDLSISKEDTPAATQ
Sbjct: 644 PRMVERLVCANDWLRGGNYVSVEEDSEQMALLEEELGDLSISKEDTPAATQ 694
>Os10g0118700 Zinc finger, BED-type predicted domain containing protein
Length = 737
Score = 105 bits (262), Expect = 7e-24, Method: Composition-based stats.
Identities = 51/51 (100%), Positives = 51/51 (100%)
Query: 2 PRMVERLVCANDWLRGGNYVSVEEDSEQMALLEEELGDLSISKEDTPAATQ 52
PRMVERLVCANDWLRGGNYVSVEEDSEQMALLEEELGDLSISKEDTPAATQ
Sbjct: 687 PRMVERLVCANDWLRGGNYVSVEEDSEQMALLEEELGDLSISKEDTPAATQ 737
>Os01g0170400 HAT dimerisation domain containing protein
Length = 664
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/34 (100%), Positives = 34/34 (100%)
Query: 2 PRMVERLVCANDWLRGGNYVSVEEDSEQMALLEE 35
PRMVERLVCANDWLRGGNYVSVEEDSEQMALLEE
Sbjct: 541 PRMVERLVCANDWLRGGNYVSVEEDSEQMALLEE 574
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.129 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,062,289
Number of extensions: 64036
Number of successful extensions: 183
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 4
Length of query: 52
Length of database: 17,035,801
Length adjustment: 25
Effective length of query: 27
Effective length of database: 15,730,451
Effective search space: 424722177
Effective search space used: 424722177
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 149 (62.0 bits)