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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0618200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0183) R2 : 0.000792
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0231 (0.0385) R2dN8 : 0.00102 R2N8 : 0.000792
σ : 0.344
deviance : 54.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.08 0.339 3.11 0.00613 0.0564 0.586 -0.483 -0.801 0.037 2.06 8.603 10 -- --
52.12 0.336 3.11 0.00929 0.0571 0.779 -0.461 -- 0.0371 2.08 8.593 10 -- --
52.89 0.339 3.11 0.0157 0.0599 0.648 -- -0.231 0.0362 3.42 8.549 10 -- --
52.89 0.339 3.11 0.0192 0.0595 0.709 -- -- 0.0371 3.5 8.584 10 -- --
53.08 0.339 3.11 0.0186 -- 0.647 -- -0.0734 0.037 -- 8.618 10 -- --
53.83 0.344 3.12 -0.0391 0.0199 -- -0.361 -- 0.0182 0.557 -- -- -- --
54.37 0.345 3.12 -0.0259 0.0303 -- -- -- 0.0196 3.57 -- -- -- --
53.08 0.339 3.11 0.0185 -- 0.663 -- -- 0.0372 -- 8.639 10 -- --
52.9 0.339 3.11 -- 0.0595 0.699 -- -- 0.0346 3.52 8.588 10 -- --
54.42 0.345 3.12 -0.0247 -- -- -- -- 0.0204 -- -- -- -- --
54.39 0.345 3.12 -- 0.0298 -- -- -- 0.0225 3.57 -- -- -- --
53.09 0.339 3.11 -- -- 0.652 -- -- 0.035 -- 8.642 10 -- --
54.44 0.344 3.12 -- -- -- -- -- 0.0231 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.67 atmosphere 1005.0 30 > th dose independent rect. 2 1
2 44.68 wind 9.0 30 < th dose independent rect. 3 23
3 44.74 wind 3.0 30 < th dose independent rect. 2 1
4 44.74 atmosphere 1000.0 30 > th dose dependent rect. 2 1
10 44.85 wind 7.0 30 < th dose dependent rect. 2 1
12 44.86 temperature 10.0 30 > th dose dependent rect. 2 1
14 44.87 temperature 10.0 30 > th dose independent rect. 2 1
16 44.87 temperature 30.0 30 < th dose independent rect. 2 1
17 44.87 humidity 50.0 30 > th dose independent rect. 2 1
21 44.87 atmosphere 1010.0 30 < th dose independent rect. 2 1
23 44.87 radiation 1.0 30 < th dose independent rect. 2 1
28 44.87 precipitation 0.1 30 < th dose independent rect. 2 1
29 44.87 temperature 10.0 30 > th dose independent rect. 3 23
32 44.87 radiation 1.0 30 < th dose dependent rect. 2 1
37 44.87 precipitation 0.1 30 < th dose dependent rect. 2 1
42 44.96 humidity 50.0 30 > th dose dependent rect. 2 1
46 45.05 temperature 30.0 30 < th dose dependent rect. 2 1
49 45.14 atmosphere 1015.0 30 < th dose dependent rect. 2 1
52 45.16 wind 1.0 30 > th dose independent rect. 2 1
65 45.51 radiation 1.0 43200 < th dose dependent rect. 3 1
111 46.14 wind 9.0 1440 < th dose independent rect. 3 1
112 46.14 temperature 10.0 1440 > th dose independent rect. 3 1
115 46.14 temperature 30.0 1440 < th dose independent rect. 3 1
119 46.14 humidity 50.0 1440 > th dose independent rect. 3 1
128 46.14 atmosphere 995.0 1440 > th dose independent rect. 3 1
129 46.14 radiation 1.0 1440 < th dose independent rect. 3 1
149 46.14 temperature 10.0 1440 > th dose independent rect. 4 23
166 46.81 atmosphere 1000.0 10 > th dose independent rect. 3 23
177 47.36 precipitation 0.1 30 < th dose independent rect. 3 23
178 47.36 precipitation 0.1 30 < th dose dependent rect. 3 23
212 49.45 temperature 10.0 30 > th dose dependent rect. 3 23
231 49.87 humidity 90.0 90 < th dose independent rect. 1 2
232 49.87 humidity 50.0 30 > th dose independent rect. 3 23
246 50.07 humidity 90.0 90 < th dose independent rect. 1 5
279 50.25 temperature 25.0 270 > th dose independent rect. 23 4
282 50.27 wind 3.0 10 < th dose dependent rect. 22 5
284 50.28 wind 1.0 10 < th dose independent rect. 14 13
291 50.30 wind 1.0 10 < th dose independent rect. 17 10
332 50.54 wind 1.0 10 < th dose independent rect. 7 20
381 50.69 temperature 30.0 30 < th dose independent rect. 3 23
384 50.71 wind 9.0 720 < th dose independent rect. 3 8
396 50.78 wind 9.0 30 > th dose dependent rect. 17 2
418 50.90 precipitation 0.1 720 < th dose independent rect. 3 8
422 50.90 temperature 25.0 270 > th dose dependent rect. 23 4
424 50.90 precipitation 0.1 720 < th dose dependent rect. 3 8
426 50.91 atmosphere 1015.0 720 < th dose independent rect. 3 8
447 51.00 atmosphere 1005.0 10 > th dose dependent rect. 1 5
478 51.03 wind 9.0 720 < th dose independent rect. 23 16
490 51.07 atmosphere 995.0 720 > th dose independent rect. 23 16
494 51.08 temperature 10.0 720 > th dose independent rect. 3 8
495 51.08 humidity 50.0 720 > th dose independent rect. 3 8
496 51.08 atmosphere 995.0 720 > th dose independent rect. 3 8
497 51.08 temperature 10.0 720 > th dose independent rect. 11 16
510 51.11 temperature 10.0 720 > th dose independent rect. 15 8
511 51.11 temperature 10.0 720 > th dose independent rect. 23 16
522 51.12 precipitation 0.1 720 < th dose independent rect. 23 16
526 51.12 precipitation 0.1 720 < th dose dependent rect. 23 16
532 51.15 temperature 30.0 720 < th dose independent rect. 15 12
533 51.15 atmosphere 995.0 720 > th dose independent rect. 11 16
542 51.18 atmosphere 995.0 720 > th dose independent rect. 15 8
564 51.19 temperature 10.0 720 > th dose dependent rect. 3 2
582 51.24 temperature 15.0 30 > th dose dependent rect. 3 17
583 51.25 wind 9.0 10 > th dose independent rect. 17 1
592 51.25 temperature 15.0 30 > th dose dependent rect. 3 19
595 51.26 temperature 20.0 30 > th dose independent rect. 3 14
622 51.28 radiation 40.0 90 < th dose dependent rect. 13 14
659 51.32 temperature 10.0 30 > th dose dependent rect. 3 14
745 51.37 wind 9.0 30 < th dose dependent rect. 3 23
747 51.38 precipitation 0.1 720 < th dose independent rect. 15 8
751 51.38 precipitation 0.1 720 < th dose dependent rect. 15 8
769 51.42 atmosphere 1015.0 30 < th dose independent rect. 3 23
780 51.43 humidity 50.0 720 > th dose independent rect. 23 16
784 51.44 atmosphere 1015.0 14400 < th dose independent rect. 15 5
789 51.44 radiation 40.0 14400 < th dose dependent rect. 18 10
793 51.45 humidity 90.0 10 > th dose independent rect. 24 3
800 51.45 wind 9.0 10 > th dose dependent sin 10 NA
802 51.45 radiation 30.0 90 < th dose dependent rect. 11 16
806 51.46 atmosphere 1015.0 14400 > th dose independent rect. 14 3
809 51.46 atmosphere 1015.0 14400 > th dose dependent rect. 13 6
817 51.47 wind 9.0 10 > th dose dependent rect. 13 5
828 51.47 wind 9.0 10 > th dose dependent rect. 17 21
841 51.48 radiation 40.0 90 < th dose dependent rect. 15 12
881 51.51 radiation 40.0 14400 < th dose dependent rect. 18 1
906 51.53 temperature 30.0 720 < th dose independent rect. 15 22
926 51.54 wind 3.0 10 < th dose dependent rect. 7 20
962 51.58 radiation 20.0 14400 < th dose dependent rect. 18 6
971 51.59 precipitation 0.1 720 < th dose independent rect. 11 16
973 51.59 wind 1.0 43200 < th dose dependent rect. 17 2
979 51.59 precipitation 0.1 720 < th dose dependent rect. 11 16
988 51.60 radiation 10.0 14400 < th dose dependent rect. 18 4