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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0674900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0366) R2 : 0.0418
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.343 (0.077) R2dN8 : 0.0539 R2N8 : 0.0418
σ : 0.689
deviance : 218
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209.16 0.68 2.93 -0.0593 0.736 0.71 -0.828 -0.706 0.39 12.2 0.5712 108 -- --
209.28 0.674 2.95 -0.178 0.755 0.719 -0.0737 -- 0.354 12.6 0.2893 118 -- --
209.03 0.673 2.93 -0.0912 0.776 0.741 -- -0.0138 0.385 12.6 0.2503 117 -- --
209.01 0.673 2.93 -0.0954 0.776 0.741 -- -- 0.38 12.6 0.24 120 -- --
214.67 0.682 2.96 -0.156 -- 0.161 -- 0.118 0.323 -- 1.321 11 -- --
216.69 0.69 2.96 -0.155 0.0833 -- -0.375 -- 0.323 5.05 -- -- -- --
216.81 0.69 2.96 -0.156 0.0997 -- -- -- 0.324 2.47 -- -- -- --
214.75 0.683 2.96 -0.146 -- 0.156 -- -- 0.329 -- 1.435 14 -- --
209.23 0.674 2.93 -- 0.803 0.768 -- -- 0.388 12.6 0.2314 120 -- --
217.39 0.689 2.96 -0.152 -- -- -- -- 0.327 -- -- -- -- --
217.45 0.69 2.96 -- 0.0967 -- -- -- 0.342 2.45 -- -- -- --
215.31 0.683 2.95 -- -- 0.157 -- -- 0.345 -- 1.342 14 -- --
218 0.689 2.95 -- -- -- -- -- 0.343 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 197.52 radiation 20.0 4320 < th dose dependent rect. 23 1
6 198.15 temperature 20.0 30 > th dose dependent rect. 22 1
7 198.18 temperature 25.0 30 > th dose independent rect. 22 1
9 198.23 wind 3.0 30 < th dose independent rect. 22 1
10 198.28 wind 9.0 1440 < th dose independent rect. 23 1
11 198.28 temperature 10.0 1440 > th dose independent rect. 23 1
14 198.28 temperature 30.0 1440 < th dose independent rect. 23 1
18 198.28 humidity 50.0 1440 > th dose independent rect. 23 1
28 198.28 atmosphere 995.0 1440 > th dose independent rect. 23 1
29 198.28 radiation 1.0 1440 < th dose independent rect. 23 1
49 198.28 temperature 10.0 1440 > th dose independent rect. 24 23
57 198.37 humidity 80.0 30 > th dose independent rect. 22 1
61 198.56 wind 5.0 30 < th dose dependent rect. 22 1
67 198.93 humidity 70.0 30 > th dose dependent rect. 22 1
71 199.22 humidity 90.0 30 < th dose independent rect. 22 1
73 199.28 wind 1.0 30 > th dose independent rect. 22 1
76 199.29 temperature 10.0 30 > th dose independent rect. 22 1
78 199.29 temperature 30.0 30 < th dose independent rect. 22 1
79 199.29 humidity 50.0 30 > th dose independent rect. 22 1
82 199.29 atmosphere 995.0 30 > th dose independent rect. 22 1
83 199.29 atmosphere 1010.0 30 < th dose independent rect. 22 1
85 199.29 radiation 1.0 30 < th dose independent rect. 22 1
90 199.29 temperature 10.0 30 > th dose independent rect. 23 23
91 199.29 radiation 1.0 30 < th dose dependent rect. 22 1
96 199.31 atmosphere 995.0 30 > th dose dependent rect. 22 1
97 199.32 atmosphere 1005.0 30 > th dose independent rect. 22 1
100 199.35 precipitation 0.1 30 < th dose independent rect. 22 1
101 199.35 precipitation 0.1 30 < th dose dependent rect. 22 1
104 199.56 atmosphere 1015.0 30 < th dose dependent rect. 22 1
109 200.04 wind 9.0 30 < th dose independent rect. 23 23
115 201.32 wind 1.0 30 > th dose dependent rect. 22 1
116 201.50 temperature 25.0 10 > th dose dependent rect. 4 1
117 201.63 humidity 90.0 30 < th dose dependent rect. 22 1
118 201.86 temperature 30.0 30 < th dose dependent rect. 22 1
124 202.24 temperature 25.0 10 > th dose independent rect. 3 2
125 202.27 temperature 25.0 90 > th dose independent rect. 2 3
169 203.27 humidity 90.0 10 < th dose independent rect. 4 1
172 203.57 wind 1.0 30 > th dose dependent rect. 4 1
176 204.19 atmosphere 1005.0 30 > th dose dependent rect. 4 1
179 204.30 temperature 25.0 10 > th dose independent rect. 22 8
182 204.51 temperature 15.0 10 > th dose dependent rect. 22 8
197 205.06 wind 1.0 30 > th dose independent rect. 4 1
207 205.46 wind 9.0 30 < th dose independent rect. 5 23
208 205.48 radiation 40.0 30 < th dose independent rect. 5 23
216 205.83 radiation 1.0 10 > th dose independent rect. 13 23
217 205.88 radiation 1.0 90 > th dose independent sin 10 NA
230 206.12 radiation 1.0 90 > th dose independent rect. 18 15
232 206.13 radiation 1.0 90 > th dose independent rect. 4 5
243 206.19 atmosphere 1000.0 10 > th dose dependent rect. 6 3
261 206.29 temperature 15.0 10 > th dose dependent rect. 6 3
264 206.35 radiation 1.0 30 > th dose independent rect. 16 17
267 206.37 radiation 1.0 90 < th dose independent sin 10 NA
275 206.48 atmosphere 1005.0 30 > th dose independent rect. 4 1
279 206.51 radiation 1.0 30 < th dose dependent rect. 4 1
281 206.52 radiation 1.0 90 < th dose dependent sin 10 NA
282 206.53 wind 3.0 30 < th dose independent rect. 4 1
287 206.55 temperature 10.0 30 > th dose independent rect. 4 1
289 206.55 temperature 30.0 30 < th dose independent rect. 4 1
290 206.55 humidity 50.0 30 > th dose independent rect. 4 1
294 206.55 atmosphere 995.0 30 > th dose independent rect. 4 1
295 206.55 atmosphere 1010.0 30 < th dose independent rect. 4 1
297 206.55 radiation 1.0 30 < th dose independent rect. 4 1
302 206.55 precipitation 0.1 30 < th dose independent rect. 4 1
303 206.55 temperature 10.0 30 > th dose independent rect. 5 23
308 206.55 precipitation 0.1 30 < th dose dependent rect. 4 1
321 206.69 radiation 20.0 10 < th dose independent rect. 6 3
322 206.69 radiation 1.0 90 < th dose independent rect. 21 14
323 206.69 temperature 10.0 30 > th dose dependent rect. 6 16
328 206.71 radiation 1.0 90 < th dose dependent rect. 21 14
333 206.76 radiation 1.0 90 < th dose independent rect. 21 10
334 206.76 wind 9.0 30 < th dose dependent rect. 4 1
335 206.76 humidity 50.0 30 > th dose dependent rect. 4 1
348 206.77 atmosphere 995.0 30 > th dose independent rect. 23 23
352 206.79 temperature 30.0 10 < th dose independent rect. 23 23
353 206.79 precipitation 0.1 30 < th dose independent rect. 5 23
356 206.79 precipitation 0.1 30 < th dose dependent rect. 5 23
359 206.81 atmosphere 995.0 30 > th dose independent rect. 5 23
367 206.84 radiation 1.0 90 < th dose dependent rect. 21 10
394 206.99 radiation 40.0 10 < th dose independent rect. 6 3
395 206.99 radiation 40.0 10 < th dose dependent rect. 6 3
397 207.00 atmosphere 1015.0 30 < th dose dependent rect. 4 1
398 207.01 wind 5.0 10 < th dose independent rect. 6 3
399 207.01 humidity 90.0 10 < th dose dependent rect. 4 1
404 207.04 wind 9.0 10 < th dose dependent rect. 6 3
432 207.07 temperature 20.0 30 > th dose independent rect. 6 3
434 207.07 radiation 40.0 10 < th dose independent rect. 6 16
439 207.08 temperature 30.0 30 < th dose dependent rect. 4 1
441 207.09 atmosphere 1005.0 30 > th dose independent rect. 9 20
454 207.15 temperature 10.0 10 > th dose independent rect. 6 3
456 207.15 temperature 30.0 10 < th dose independent rect. 6 3
457 207.15 humidity 50.0 10 > th dose independent rect. 6 3
459 207.15 atmosphere 995.0 10 > th dose independent rect. 6 3
461 207.15 atmosphere 1015.0 10 < th dose independent rect. 6 3
462 207.15 precipitation 0.1 10 < th dose independent rect. 6 3
463 207.15 temperature 10.0 10 > th dose independent rect. 9 21
464 207.15 precipitation 0.1 10 < th dose dependent rect. 6 3
471 207.18 precipitation 0.1 10 < th dose independent rect. 9 21
472 207.18 precipitation 0.1 10 < th dose dependent rect. 9 21
485 207.19 atmosphere 995.0 30 > th dose dependent rect. 9 21
493 207.24 temperature 10.0 1440 > th dose independent rect. 7 3
496 207.24 atmosphere 995.0 1440 > th dose independent rect. 7 3
497 207.24 atmosphere 1015.0 1440 < th dose independent rect. 7 3
499 207.24 temperature 10.0 1440 > th dose independent rect. 10 21
509 207.29 humidity 90.0 10 < th dose independent rect. 6 3
511 207.30 atmosphere 995.0 10 > th dose independent rect. 9 21
514 207.31 wind 1.0 10 > th dose independent rect. 6 3
525 207.35 radiation 1.0 30 < th dose dependent rect. 4 13
532 207.38 humidity 50.0 4320 > th dose independent rect. 7 3
573 207.47 radiation 1.0 10 < th dose independent rect. 19 23
592 207.54 humidity 50.0 30 > th dose independent rect. 9 21
621 207.66 radiation 10.0 270 < th dose independent rect. 5 2
628 207.67 temperature 30.0 90 < th dose independent rect. 9 20
645 207.73 humidity 50.0 30 > th dose dependent rect. 6 3
652 207.76 wind 9.0 90 < th dose independent rect. 5 16
657 207.77 radiation 1.0 90 < th dose dependent rect. 21 20
663 207.79 radiation 1.0 10 < th dose independent rect. 4 12
670 207.82 radiation 1.0 90 < th dose independent rect. 21 20
683 207.89 radiation 1.0 90 < th dose dependent rect. 19 11
685 207.89 radiation 1.0 90 < th dose dependent rect. 19 16
694 207.93 radiation 1.0 90 < th dose independent rect. 19 11
717 208.04 radiation 40.0 90 < th dose independent rect. 5 6
730 208.09 radiation 1.0 90 < th dose independent rect. 19 16
748 208.16 humidity 80.0 270 > th dose independent rect. 5 2
770 208.28 wind 1.0 10 > th dose independent rect. 6 15
772 208.29 wind 9.0 90 < th dose independent rect. 5 14
781 208.31 radiation 1.0 90 < th dose dependent rect. 19 22
782 208.31 radiation 1.0 10 < th dose dependent rect. 19 23
785 208.32 wind 9.0 30 < th dose independent rect. 9 21
787 208.33 wind 7.0 1440 < th dose independent rect. 5 1
789 208.33 temperature 10.0 1440 > th dose independent rect. 5 1
792 208.33 temperature 30.0 1440 < th dose independent rect. 5 1
796 208.33 humidity 50.0 1440 > th dose independent rect. 5 1
805 208.33 atmosphere 995.0 1440 > th dose independent rect. 5 1
806 208.33 atmosphere 1015.0 1440 < th dose independent rect. 5 1
808 208.33 radiation 20.0 1440 < th dose independent rect. 5 1
819 208.33 temperature 10.0 1440 > th dose independent rect. 6 23
830 208.39 radiation 40.0 10 < th dose independent rect. 6 13
837 208.40 radiation 1.0 90 < th dose dependent rect. 21 23
839 208.42 wind 9.0 10 < th dose independent rect. 6 15
854 208.47 radiation 1.0 90 > th dose independent rect. 13 20
868 208.51 temperature 30.0 10 < th dose independent rect. 5 23
872 208.52 radiation 40.0 10 < th dose dependent rect. 5 23
893 208.55 precipitation 0.1 90 < th dose independent rect. 5 16
895 208.55 precipitation 0.1 90 < th dose dependent rect. 5 16
896 208.57 wind 7.0 90 < th dose independent rect. 21 8
910 208.60 wind 1.0 30 > th dose independent rect. 5 23
917 208.61 radiation 1.0 10 < th dose independent rect. 4 23
927 208.64 humidity 50.0 30 > th dose independent rect. 5 23
936 208.67 atmosphere 995.0 270 > th dose dependent rect. 5 1
941 208.70 atmosphere 1005.0 30 > th dose independent rect. 9 7
953 208.73 temperature 10.0 30 > th dose dependent rect. 5 23
958 208.75 atmosphere 995.0 30 > th dose dependent rect. 9 7
966 208.76 wind 1.0 90 > th dose independent rect. 9 20
969 208.77 atmosphere 1015.0 10 < th dose independent rect. 9 21
970 208.77 wind 9.0 10 < th dose independent rect. 13 23
973 208.78 precipitation 0.1 90 < th dose independent rect. 21 8
976 208.78 precipitation 0.1 90 < th dose dependent rect. 21 8
980 208.80 temperature 25.0 10 > th dose independent rect. 6 16
982 208.81 radiation 40.0 10 < th dose independent rect. 6 9
985 208.81 wind 9.0 90 < th dose dependent rect. 5 16
987 208.82 atmosphere 1015.0 30 < th dose independent rect. 5 23
994 208.83 temperature 25.0 30 > th dose dependent rect. 16 17
995 208.84 temperature 10.0 90 > th dose independent rect. 21 8
997 208.84 temperature 30.0 90 < th dose independent rect. 21 8
998 208.84 humidity 50.0 90 > th dose independent rect. 21 8