BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0674900 Os07g0674900|Os07g0674900
(694 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G42170.1 | chr3:14321838-14323928 FORWARD LENGTH=697 192 4e-49
AT1G18560.1 | chr1:6385614-6388005 FORWARD LENGTH=691 83 6e-16
>AT3G42170.1 | chr3:14321838-14323928 FORWARD LENGTH=697
Length = 696
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 167/671 (24%), Positives = 286/671 (42%), Gaps = 103/671 (15%)
Query: 44 DREKADEESRKRKPMALRSDVWESFSKVKLANGDERAKCKWCTKLFHC--GSRTNGTSSL 101
D E E++ K +S VWE F+ + RA CK C + F G++ GTS L
Sbjct: 50 DTEMVSPETQPIKRRKKKSMVWEHFTIEAVEPNCRRAFCKGCNQSFAYSNGNKVAGTSHL 109
Query: 102 KAH--------LKICKKNPNKPVVDNQGTLQL-TPCDDNSTLGTVTTW-KFDPDKLRRCF 151
K H L N N P++ T + TP + + + F+ DK R+
Sbjct: 110 KRHIFKGTCPALIHTHDNDNNPLMSTPYTPKTDTPRRRYRSQNNASPYVAFNQDKCRQEI 169
Query: 152 AEMIIEDEQP-----------FV-----------------------LSERSGLRKFMTLA 177
A+MII + P FV L+E+ + K +
Sbjct: 170 AKMIIMHDYPLHMVQHPGFVSFVQSIQPHFDAVSFNNVQGDCVATYLAEKQNVMKSLEGI 229
Query: 178 CPRFVLP-----SRRTITRACVKVYXXXXXXXXXXXXXNC-----GHRGEDIRKSLENCL 227
RF L S+ T+ + + N E + ++ NC+
Sbjct: 230 PGRFCLTLDFWTSKLTLGYVFITAHYIDSDWKIQKKLLNVLMESYPEADEALSLAVANCV 289
Query: 228 AEWGID-KVFTITVDNASANNNAIKYMRRVLNESKGCVAEGEYIHMRCAAHIINLIVGDG 286
+EWG++ K+F +T N A+N+A++ +R L + +G+ + C A + D
Sbjct: 290 SEWGLEGKLFNVTF-NHPASNSAVENIRPQLCIKNPGILDGQLVIGNCVARTFGSLAKDV 348
Query: 287 LKEIGTSIQRVRAAVKFIRCGTSRLVKFKKCAELAKVQSKAFLNLDICTRWNSTYLMLNA 346
L++ I+ +R +VK ++ S +F + E +V S+ L+LD T+WN+TY+ML A
Sbjct: 349 LEKGKDVIKNIRDSVKHVKTSESHEERFTELKEQLQVPSEKVLSLDDQTQWNTTYMMLVA 408
Query: 347 AEKYQKAFERYSDEDPYYKLELEGENGPGVPTRADWEKARKMTDFLEHFYDLTLRVSVQS 406
A + ++ F DP YK P+ DW + FL+ ++ +
Sbjct: 409 ASELKEVFSCLDTADPDYK---------KPPSAEDWRHVEALCTFLKPLFEAVSTLQSTG 459
Query: 407 RTTSHTYFHEIADVLLLLREWSHSEDKLSKEMGTRMLMXXXXXXXXXXXXRQGDREKRGE 466
++ T+FHE+ L ED + M + +
Sbjct: 460 NPSAVTFFHEVWKTQSDLSRAIAGEDPFVTGIAKTM---------------------QEK 498
Query: 467 KDKGDQLLNFTVFFCVAIDPRYKLSNCIRMGIKVMFGDTVGEKVWETVNTYFRALFEEYK 526
DK + + + V +DPR+K+ + +FG+ G+ + +TV+ LF EY
Sbjct: 499 VDKYWRDCSLVLAMAVVMDPRFKM-KLVEFSFSKIFGEDAGKNI-KTVDDGIHELFTEYM 556
Query: 527 EMYTPKDKAPQPTESESTAETSKRVSCRWMSVITQQLNSEGGSGTIKSEVDKYLSEDNEP 586
+ +P++ + +++ ++ + M Q L KSE+D+YL E P
Sbjct: 557 ALPSPQNTTSEGGKADGLSDFDTYI----METTGQNL---------KSELDQYLDETLLP 603
Query: 587 DTPKFDILKWWKANSTRFPILSHLARDLLAIPITSVASESAFSAGGRTLDDFRTSLTPRM 646
+FD+L WWK N ++P LS +ARD+L+IP+++ A + F R +D+++TSL P
Sbjct: 604 RVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPET 663
Query: 647 VERLVCANDWL 657
VE L+CA +WL
Sbjct: 664 VEALICAREWL 674
>AT1G18560.1 | chr1:6385614-6388005 FORWARD LENGTH=691
Length = 690
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 103/475 (21%), Positives = 179/475 (37%), Gaps = 69/475 (14%)
Query: 216 GEDIRKSLENCLAEWGI-DKVFTITVDNASANNNAIKYMRRVLNESKGCVAEGEYIHMRC 274
G +I SL L + I D++ T DN+ +A ++ + K + ++ C
Sbjct: 250 GSEIYNSLLKVLKTYAIEDRILCCTHDNSENAIHACHSLKEYFDGQKVL----PFCYIPC 305
Query: 275 AAHIINLIVGDGLKEIGTSIQRVRAAVKFIRCGTSRLVKFKKCAELAKVQSKAFLNLDIC 334
AA +N I+ +GL I I +VR + + T F + A + L +D
Sbjct: 306 AAQTLNDIIDEGLATIKPIISKVREFTQELNASTELSDDFIQLTT-AYQEGNWKLPIDAS 364
Query: 335 TRWNSTYLMLNAAEKYQKAFERYSDEDPYYKLELEGENGPGVPTRADWEKARKMTDFLEH 394
+RW+ Y M+N K K+ + RK D LE+
Sbjct: 365 SRWSGNYQMVNILCKASKSLDSV---------------------------IRKNEDALEN 397
Query: 395 FYDLTLRVSVQSRTTSHTY-----FHEIADVLLLLREWSHSEDKLSKEMGTRMLMXXXXX 449
L+ V + T H Y FH+ + + ++ + L + + M+
Sbjct: 398 RMMLS-SVEKNAVTIVHNYLDLDSFHKTTNDMCTNKDLTVGLALLFMDNISEMITTCQKS 456
Query: 450 XXXXXXXRQ-GDREKRGEKDKGDQLLNFTVFFCVAIDPRYKLSNCIRMGIKVMFGDTVGE 508
R + + + Q+ N + +DPR K E
Sbjct: 457 CHNPDWLRTCAESMAQKARSYNTQVCNVFTYITAILDPRIK-----------------TE 499
Query: 509 KVWETVNTYFRALFEEYKEMYTPKDKAPQPTESESTAETSKRV-----SCRWMSVITQQL 563
+ ET+N + +E + + + T S ++ + V + + I ++
Sbjct: 500 YIPETIN--LESYIDEARSHFIRNYSSSHFTSSMTSGYRPQEVDEGGGNISFAEEIARRK 557
Query: 564 NSEGGSGTIKSEVDKYLSEDNEPDTPKFDILKWWKANSTRFPILSHLARDLLAIPITSVA 623
S + E+ +YLSE P + D+L WWK NS R+P LS++ARD LA+ TS A
Sbjct: 558 RRGSMSNNVVDELTQYLSESIVP--MQTDVLDWWKVNSGRYPRLSNMARDFLAVQATSAA 615
Query: 624 SESAFSAGGRTLDDFRTSLTPRMVERLVCANDWLRGG---NYVSVEEDSEQMALL 675
E F G +D + + + ++C W+ G Y E D E++ L
Sbjct: 616 PEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSWIEAGMKLKYKCSEIDYERLMEL 670
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,096,033
Number of extensions: 632162
Number of successful extensions: 3206
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3203
Number of HSP's successfully gapped: 4
Length of query: 694
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 589
Effective length of database: 8,227,889
Effective search space: 4846226621
Effective search space used: 4846226621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)