BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0616300 Os11g0616300|AK103590
(493 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0616300 Remorin, C-terminal region domain containing p... 805 0.0
Os03g0120200 Remorin, C-terminal region domain containing p... 86 5e-17
AK101665 86 7e-17
Os02g0116800 Remorin, C-terminal region domain containing p... 77 4e-14
Os12g0613600 Remorin, C-terminal region domain containing p... 70 4e-12
>Os11g0616300 Remorin, C-terminal region domain containing protein
Length = 493
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/493 (81%), Positives = 402/493 (81%)
Query: 1 MEPKSSSSSHYLQPSATLPSTRRNSFQXXXXXXXXXXXXMNPFGPTFSDPLCSLNLKETS 60
MEPKSSSSSHYLQPSATLPSTRRNSFQ MNPFGPTFSDPLCSLNLKETS
Sbjct: 1 MEPKSSSSSHYLQPSATLPSTRRNSFQGVGAEAGGGGGGMNPFGPTFSDPLCSLNLKETS 60
Query: 61 EFVRSSFPMATMARXXXXXXXXXXXXXXYHXXXXXXXXXXXXXXXXXXXXXXXXXXXVPA 120
EFVRSSFPMATMAR YH VPA
Sbjct: 61 EFVRSSFPMATMARSNSSNGATGNGGHGYHRETSTASSSSSSSASAQRRRAEQQQQQVPA 120
Query: 121 TPGRPLLFFNSSSPAHHQLVSARRSVPSKWEDAEKWVRQASSDXXXXXXXXXXKGSKLQE 180
TPGRPLLFFNSSSPAHHQLVSARRSVPSKWEDAEKWVRQASSD KGSKLQE
Sbjct: 121 TPGRPLLFFNSSSPAHHQLVSARRSVPSKWEDAEKWVRQASSDHHGGHHHHHGKGSKLQE 180
Query: 181 EKRASAVRRSVDADVTALALYTAPAAEVFLKDKFTDNVEPSKESFVFRSSYCEPTKNTAA 240
EKRASAVRRSVDADVTALALYTAPAAEVFLKDKFTDNVEPSKESFVFRSSYCEPTKNTAA
Sbjct: 181 EKRASAVRRSVDADVTALALYTAPAAEVFLKDKFTDNVEPSKESFVFRSSYCEPTKNTAA 240
Query: 241 QAVAAGNGIDHRRDIGTEMTPLGSSTTSRCHTPIKSTSPARHNTPASRSGPLVPYXXXXX 300
QAVAAGNGIDHRRDIGTEMTPLGSSTTSRCHTPIKSTSPARHNTPASRSGPLVPY
Sbjct: 241 QAVAAGNGIDHRRDIGTEMTPLGSSTTSRCHTPIKSTSPARHNTPASRSGPLVPYAGGGG 300
Query: 301 XXXQDISDLADCHFAKLDLGAQFDAMLINWXXXXXXXXXXXXXLRHFEASVAAVGEKRGG 360
QDISDLADCHFAKLDLGAQFDAMLINW LRHFEASVAAVGEKRGG
Sbjct: 301 GAGQDISDLADCHFAKLDLGAQFDAMLINWSSKEEEEEEVSKSLRHFEASVAAVGEKRGG 360
Query: 361 AGDCRWEDDDRAKSCIRYQREEAKIQAWINLESAKAEAQSRKLEVKIQKMRSNLEEKLMR 420
AGDCRWEDDDRAKSCIRYQREEAKIQAWINLESAKAEAQSRKLEVKIQKMRSNLEEKLMR
Sbjct: 361 AGDCRWEDDDRAKSCIRYQREEAKIQAWINLESAKAEAQSRKLEVKIQKMRSNLEEKLMR 420
Query: 421 RMTTVHRRAEEWRATAQAQHLQQLKRAAEQVRRAKATSXXXXXXXLAGSNASCGCFPCNG 480
RMTTVHRRAEEWRATAQAQHLQQLKRAAEQVRRAKATS LAGSNASCGCFPCNG
Sbjct: 421 RMTTVHRRAEEWRATAQAQHLQQLKRAAEQVRRAKATSHHHHHHHLAGSNASCGCFPCNG 480
Query: 481 SNNIISGNLLNYY 493
SNNIISGNLLNYY
Sbjct: 481 SNNIISGNLLNYY 493
>Os03g0120200 Remorin, C-terminal region domain containing protein
Length = 423
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 141/337 (41%), Gaps = 28/337 (8%)
Query: 144 RSVPSKWEDAEKWVRQASSDXXXXXXXXXXKGSKLQEEKRASAVRRSVDADVTALALYTA 203
R PSKW+DAEKW+ +++ GS + SA+ + V+
Sbjct: 109 RPTPSKWDDAEKWISSPTANRGGRV------GSAAGAAPKKSAL--AFPEHVSRPPAVAK 160
Query: 204 PAAEVFLK-DKFTDNVEPSKESFVFRSSYCEPTKNTAAQAVAAGNGIDHRRDIGTEMTPL 262
AEV + N + F + + A AV + + RD+GTEMTP+
Sbjct: 161 VVAEVPINTGTLVKNSVALAQPISFNPAQSASIVDEPAPAVRSVS----MRDMGTEMTPI 216
Query: 263 GSSTTSRCHTPIKSTSPARHNTPASRSGPLVPYXXXXXXXXQDISDLADCHFAK--LDLG 320
S SR TPI ++SP TP + + + + + K +DLG
Sbjct: 217 ASQEPSRTGTPIIASSPTSSRTPTPQRNAEISIGEFGPNKMEMSEEELQMNTRKEIMDLG 276
Query: 321 AQFDAMLIN-WXXXXXXXXXXXXXLRHFEASVAAVGEKRGGAGDCRWEDDDRAKSCIRYQ 379
+ I W + A ++ A D WE+ ++AK R+Q
Sbjct: 277 QRLGKTTIAAWASKEEKSTTS---FANVITDKAVEIDREARAAD--WEEAEKAKYLARFQ 331
Query: 380 REEAKIQAWINLESAKAEAQSRKLEVKIQKMRSNLEEKLMRRMTTVHRRAEEWRATAQAQ 439
REE KIQAW N + AK EA+ +++E KI+ R+ +++L ++ +AE R A+++
Sbjct: 332 REEVKIQAWENHQKAKIEAEMKRMEAKIEIKRAREQDRLSSKLAAARHKAEARREAAESR 391
Query: 440 HLQQLKRAAEQVRRAKATSXXXXXXXLAGSNASCGCF 476
Q+ R EQ + + T S+ SC C+
Sbjct: 392 KNQEAARTEEQAAQIRKTGHIP-------SSISCWCW 421
>AK101665
Length = 361
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 147/330 (44%), Gaps = 41/330 (12%)
Query: 144 RSVPSKWEDAEKWVRQASSDXXXXXXXXXXKGSKLQEEKRASAVRR-------------- 189
+ PSKW+DA+KW+ S K++ + RR
Sbjct: 36 KPTPSKWDDAQKWL--VSLSNGGGGGVDGIHSGKVRPRNSNADDRRLLSSSSQNGRVSCS 93
Query: 190 SVDADVTALALYTAPAAEVFLKDKFTDNVEPSKESFVFRSSYC--EPTKNTAAQAVAAGN 247
SVD + L AP L + D+V +K + YC +P + A AV
Sbjct: 94 SVDGALE-YNLVAAPPTPPQLGEAAADDVSETK-----KIDYCMVQPQHGSPA-AVLRSV 146
Query: 248 GIDHRRDIGTEMTPLGSSTTSRCHTPIKSTSPARHNTPASRSGPLVPYXXXXXXXXQDIS 307
+ RD+GTEMTP+ S SR TP+++++P + SR P P ++
Sbjct: 147 CL---RDMGTEMTPIASKEPSRSATPLRASTPVSRSPVPSR--PSTPGRRRYDVAV-GVT 200
Query: 308 DLADCHFAK-LDLGAQFDAMLINWXXXXXXXXXXXXXLRHFEASVAAVGEKRGGAGDCRW 366
+ + A+ + +G+ D H +++ + E R A W
Sbjct: 201 AVVESRTAEPVAVGSVSDGGGFGGGCAVDESSSGGFG-NHAQSTTTGL-ESRAVA----W 254
Query: 367 EDDDRAKSCIRYQREEAKIQAWINLESAKAEAQSRKLEVKIQKMRSNLEEKLMRRMTTVH 426
++ +RAK RY+REE KIQAW N E KAE + +K+E+K ++M++ EKL ++
Sbjct: 255 DEAERAKFTARYKREEMKIQAWENHEKRKAELEMKKIEMKAEQMKARAHEKLANKLAAAR 314
Query: 427 RRAEEWRATAQA---QHLQQLKRAAEQVRR 453
R AEE RATA+A +H + + A+ +RR
Sbjct: 315 RMAEEKRATAEAKLNEHAARTTQKADYIRR 344
>Os02g0116800 Remorin, C-terminal region domain containing protein
Length = 510
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 14/208 (6%)
Query: 253 RDIGTEMTPLGSSTTSRCHTPIKSTSP--ARHNTPASRSGP-----LVPYXXXXXXXXQD 305
RD+GTEMTP+ S SR TP+++TSP +R TP GP ++ + +
Sbjct: 286 RDMGTEMTPIASQEPSRTGTPVRATSPDCSRPTTPRKTIGPNAIGAVIGHGECSNVELSE 345
Query: 306 ISDLADCHFAKLDLGAQFDAMLIN-WXXXXXXXXXXXXXLRH--FEASVAAVGEKRGGAG 362
+ LG Q I W L+ + S V E R A
Sbjct: 346 QELQMKTRREIMLLGTQLGKTNIAAWASNKEEEKDASLSLKGVPMDQSTQKVTEIRAAAW 405
Query: 363 DCRWEDDDRAKSCIRYQREEAKIQAWINLESAKAEAQSRKLEVKIQKMRSNLEEKLMRRM 422
E+ ++AK R++REE KIQAW + + AK EA+ RK+EV +++MR+ ++KLM ++
Sbjct: 406 ----EEAEKAKYLARFKREEIKIQAWEDHQRAKIEAEMRKIEVDVERMRARAQDKLMSQL 461
Query: 423 TTVHRRAEEWRATAQAQHLQQLKRAAEQ 450
+ A+E RA A+ + + + AEQ
Sbjct: 462 ASARHTADEKRAAAELKRSRAAAKTAEQ 489
>Os12g0613600 Remorin, C-terminal region domain containing protein
Length = 427
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 14/217 (6%)
Query: 253 RDIGTEMTPLGSSTTSRCHTPIKSTSPARHNTPASRSGPLVPYXXXXXXXXQDISDLADC 312
RD+GTEMTP+ S SR TP + +P+ + + P +++
Sbjct: 199 RDVGTEMTPMASKEQSRSGTPAGAATPSLSPLCSVPTSPRGAASASSASSERELQIRTRR 258
Query: 313 HFAKLDLGAQFDAMLI-NWXXXXXXXXXXXXXLRHFEASVAAVGEKRGGAGDCR------ 365
A L G Q M I +W GG G+ +
Sbjct: 259 EIAAL--GLQLGKMNIASWASKDDDDELPRASPEKRPRPRPRPHSGDGG-GEAKKREFEA 315
Query: 366 ----WEDDDRAKSCIRYQREEAKIQAWINLESAKAEAQSRKLEVKIQKMRSNLEEKLMRR 421
W++ + K +R+QR+E KIQ W + + AK EA+ R EV+ ++M++ ++KL RR
Sbjct: 316 RAMAWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMRHAEVQAEQMKARAKQKLSRR 375
Query: 422 MTTVHRRAEEWRATAQAQHLQQLKRAAEQVRRAKATS 458
++ + +AE +A +A+ +Q R A QV R + T
Sbjct: 376 LSALSHKAEGKQARVEARRSRQAARLARQVHRIRETG 412
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.126 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,542,633
Number of extensions: 469277
Number of successful extensions: 1685
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1682
Number of HSP's successfully gapped: 6
Length of query: 493
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 388
Effective length of database: 11,553,331
Effective search space: 4482692428
Effective search space used: 4482692428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)